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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0229800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Starch synthase IIA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0886) R2 : 0.318
β1 : -3.43 (0.363) R2dD : 0.285 R2D : -0.103
β2 : 1.41 (0.167) R2dC : 0.11 R2C : 0.088
β3 : -1.37 (0.552) R2dE : 0.0436 R2E : 0.0379
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.9 (1.76) R2dD*E : 0.124 R2D*E : -0.00902
γ1 : -0.492 (0.162) R2dN8 : 0.0213 R2N8 : -0.0531
σ : 1.29
deviance : 763.78
__
_____
C
peak time of C : 1.1
E
wheather : radiation
threshold : 0.03708
memory length : 12851
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
764.42 1.3 4.43 -3.39 1.41 -1.43 -0.00397 5.66 -0.487 1.13 0.1802 12866 -- --
806.36 1.32 4.25 -2.59 1.51 -2.16 -0.113 -- -0.34 0.288 0.5299 15825 -- --
763.78 1.29 4.44 -3.43 1.41 -1.37 -- 5.9 -0.492 1.1 0.03708 12851 -- --
791.46 1.31 4.32 -2.13 1.4 -2.34 -- -- -0.25 0.83 0.335 12921 -- --
876.88 1.38 4.45 -3.46 -- -1.65 -- 6.22 -0.524 -- 0.2388 14110 -- --
939.96 1.44 4.14 -1.27 1.45 -- -0.0982 -- 0.193 1.03 -- -- -- --
940 1.44 4.14 -1.26 1.45 -- -- -- 0.194 1.04 -- -- -- --
882.26 1.38 4.28 -2.63 -- -3.3 -- -- -0.467 -- 0.36 12698 -- --
909.34 1.4 4.18 -- 1.35 -1.82 -- -- 0.00468 1.08 1.5 10023 -- --
1070.98 1.53 4.12 -1.21 -- -- -- -- 0.222 -- -- -- -- --
981.97 1.47 4.11 -- 1.43 -- -- -- 0.334 1 -- -- -- --
1000.21 1.48 4.08 -- -- 1 -- -- 0.368 -- 1.5 11220 -- --
1109.41 1.55 4.09 -- -- -- -- -- 0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 730.92 radiation 20.0 14400 < th dose independent rect. 20 10
3 744.14 radiation 20.0 14400 < th dose independent rect. 3 3
4 748.19 radiation 10.0 14400 < th dose independent rect. 18 9
7 750.46 radiation 10.0 14400 < th dose independent rect. 18 2
14 754.03 radiation 20.0 14400 < th dose independent rect. 1 5
16 755.52 precipitation 0.1 43200 > th dose independent rect. 23 1
17 755.52 precipitation 0.1 43200 > th dose dependent rect. 23 1
19 755.86 humidity 90.0 43200 < th dose independent rect. 5 5
20 756.07 humidity 90.0 43200 < th dose independent rect. 5 7
21 756.21 precipitation 0.1 43200 < th dose independent rect. 23 1
22 756.21 precipitation 0.1 43200 < th dose dependent rect. 23 1
26 756.79 atmosphere 1015.0 43200 > th dose dependent rect. 1 1
30 757.66 humidity 80.0 43200 > th dose dependent rect. 9 1
32 757.82 atmosphere 1015.0 43200 < th dose independent rect. 11 4
33 757.90 atmosphere 1015.0 43200 < th dose independent rect. 10 7
34 757.92 atmosphere 1015.0 43200 > th dose independent rect. 11 3
35 757.93 atmosphere 1015.0 43200 > th dose independent rect. 10 6
42 758.33 humidity 80.0 43200 > th dose dependent rect. 8 3
46 758.56 radiation 1.0 14400 < th dose dependent rect. 23 8
50 758.62 radiation 1.0 14400 < th dose dependent rect. 4 3
51 758.63 radiation 1.0 14400 < th dose dependent rect. 2 5
55 758.67 radiation 1.0 14400 < th dose dependent rect. 19 12
60 758.89 radiation 1.0 43200 > th dose independent rect. 7 2
66 759.03 radiation 1.0 43200 < th dose independent rect. 7 2
93 759.54 atmosphere 1015.0 43200 < th dose independent rect. 12 1
106 759.98 humidity 90.0 43200 < th dose independent rect. 8 1
116 760.39 radiation 1.0 14400 < th dose dependent sin 9 NA
127 760.80 radiation 1.0 43200 < th dose dependent rect. 7 1
129 760.90 radiation 1.0 14400 < th dose dependent rect. 18 15
130 760.93 humidity 80.0 43200 > th dose independent rect. 17 2
138 761.04 radiation 1.0 14400 < th dose dependent rect. 17 17
143 761.06 atmosphere 1010.0 14400 > th dose dependent rect. 19 1
149 761.08 humidity 90.0 43200 > th dose independent rect. 5 7
159 761.18 humidity 80.0 43200 > th dose dependent rect. 5 7
167 761.37 radiation 30.0 4320 < th dose independent rect. 16 11
172 761.45 wind 9.0 43200 > th dose independent rect. 24 1
173 761.45 wind 9.0 43200 > th dose dependent rect. 24 1
177 761.49 atmosphere 1010.0 14400 > th dose dependent rect. 17 5
193 761.72 humidity 90.0 43200 > th dose independent rect. 8 1
196 761.73 radiation 1.0 14400 < th dose dependent rect. 17 21
214 761.99 humidity 80.0 43200 > th dose independent rect. 10 1
285 762.86 temperature 15.0 43200 < th dose independent rect. 6 1
305 763.08 humidity 80.0 43200 < th dose independent rect. 17 2
312 763.20 radiation 1.0 14400 < th dose dependent rect. 23 15
316 763.24 radiation 1.0 14400 < th dose dependent rect. 4 10
317 763.24 radiation 1.0 14400 < th dose dependent rect. 2 12
326 763.29 atmosphere 1010.0 14400 > th dose dependent sin 18 NA
333 763.37 temperature 15.0 43200 > th dose independent rect. 13 1
352 763.47 temperature 15.0 43200 < th dose independent rect. 13 1
356 763.59 wind 9.0 43200 > th dose independent rect. 19 1
393 763.91 atmosphere 1010.0 14400 > th dose independent rect. 15 4
406 764.03 atmosphere 1010.0 14400 < th dose independent rect. 15 4
409 764.04 radiation 40.0 43200 < th dose independent rect. 7 1
419 764.11 humidity 80.0 43200 > th dose dependent rect. 19 1
430 764.15 temperature 15.0 43200 < th dose independent rect. 5 4
439 764.18 wind 9.0 43200 < th dose independent rect. 19 1
457 764.30 wind 9.0 43200 > th dose dependent rect. 19 1
513 764.72 radiation 40.0 43200 < th dose independent rect. 17 15
529 764.87 atmosphere 1015.0 14400 > th dose independent rect. 20 1
532 764.90 radiation 1.0 43200 < th dose independent rect. 18 18
543 764.94 radiation 40.0 43200 < th dose independent rect. 15 17
551 764.97 atmosphere 1015.0 14400 < th dose independent rect. 19 3
560 765.02 atmosphere 1015.0 14400 < th dose independent rect. 18 6
565 765.04 atmosphere 1015.0 14400 > th dose independent rect. 19 4
569 765.06 temperature 15.0 43200 > th dose independent rect. 13 3
579 765.11 atmosphere 1015.0 14400 > th dose independent rect. 18 7
623 765.34 atmosphere 1015.0 43200 > th dose independent rect. 1 18
645 765.45 atmosphere 1015.0 14400 < th dose independent rect. 17 9
650 765.48 radiation 40.0 43200 < th dose independent rect. 15 12
657 765.51 humidity 90.0 43200 > th dose independent rect. 5 2
700 765.63 radiation 40.0 43200 < th dose independent rect. 22 10
724 765.72 temperature 15.0 43200 < th dose independent rect. 5 12
736 765.75 atmosphere 1015.0 14400 > th dose independent rect. 17 10
745 765.78 atmosphere 1015.0 43200 < th dose independent rect. 3 1
747 765.79 atmosphere 1015.0 43200 < th dose independent rect. 1 18
751 765.81 temperature 15.0 43200 < th dose independent rect. 8 1
770 765.86 radiation 40.0 43200 < th dose independent rect. 15 6
780 765.90 radiation 1.0 14400 > th dose independent rect. 4 1
791 765.90 radiation 1.0 14400 > th dose dependent rect. 4 1
806 765.92 radiation 1.0 43200 < th dose independent rect. 24 12
810 765.93 radiation 1.0 43200 < th dose independent rect. 4 8
832 765.99 radiation 40.0 43200 < th dose independent rect. 15 1
854 766.03 radiation 1.0 43200 > th dose independent rect. 4 8
880 766.09 temperature 15.0 43200 > th dose independent rect. 6 2
910 766.17 atmosphere 1015.0 14400 < th dose independent sin 14 NA
971 766.39 atmosphere 1015.0 14400 > th dose independent rect. 16 13
978 766.42 humidity 90.0 14400 > th dose independent rect. 21 6
980 766.43 atmosphere 1015.0 14400 > th dose independent sin 14 NA