Os06g0229300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hox2b protein.
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Os06g0229300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hox2b protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.33 | 0.196 | 9.2 | 0.132 | 0.451 | 0.475 | -0.147 | 0.947 | 0.0425 | 8.62 | 21.22 | 1566 | -- | -- |
| 19.19 | 0.204 | 9.23 | -0.104 | 0.45 | 0.408 | -0.134 | -- | -0.0113 | 8.69 | 21.22 | 1455 | -- | -- |
| 17.36 | 0.194 | 9.2 | 0.142 | 0.45 | 0.463 | -- | 0.951 | 0.0446 | 8.68 | 21.3 | 1546 | -- | -- |
| 19.25 | 0.204 | 9.23 | -0.0994 | 0.45 | 0.4 | -- | -- | -0.00787 | 8.77 | 21.3 | 1455 | -- | -- |
| 28.73 | 0.25 | 9.21 | 0.172 | -- | 0.449 | -- | 0.998 | 0.0548 | -- | 21.47 | 1528 | -- | -- |
| 23.48 | 0.227 | 9.2 | 0.0714 | 0.451 | -- | -0.158 | -- | 0.0997 | 8.6 | -- | -- | -- | -- |
| 23.56 | 0.227 | 9.2 | 0.0667 | 0.45 | -- | -- | -- | 0.0999 | 8.67 | -- | -- | -- | -- |
| 30.68 | 0.259 | 9.23 | 0.00234 | -- | 0.257 | -- | -- | 0.0317 | -- | 22.09 | 2795 | -- | -- |
| 19.47 | 0.205 | 9.23 | -- | 0.451 | 0.363 | -- | -- | 0.0055 | 8.75 | 21.38 | 1454 | -- | -- |
| 35.01 | 0.276 | 9.21 | 0.0677 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 23.67 | 0.228 | 9.2 | -- | 0.451 | -- | -- | -- | 0.0925 | 8.66 | -- | -- | -- | -- |
| 30.68 | 0.259 | 9.23 | -- | -- | 0.257 | -- | -- | 0.0314 | -- | 22.09 | 2795 | -- | -- |
| 35.13 | 0.277 | 9.22 | -- | -- | -- | -- | -- | 0.0962 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 4 | 17.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 15 | 17.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 20 | 17.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 64 | 17.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 102 | 18.04 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 130 | 18.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 140 | 18.09 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 147 | 18.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 148 | 18.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 149 | 18.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 221 | 18.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 248 | 18.18 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 249 | 18.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 250 | 18.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 262 | 18.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 295 | 18.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 331 | 18.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 346 | 18.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 359 | 18.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 361 | 18.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 368 | 18.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 437 | 18.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 473 | 18.25 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 474 | 18.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 509 | 18.26 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 516 | 18.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 521 | 18.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 534 | 18.26 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 563 | 18.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 617 | 18.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 641 | 18.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 652 | 18.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 679 | 18.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 689 | 18.31 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 710 | 18.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 736 | 18.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 765 | 18.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 797 | 18.34 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 847 | 18.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 878 | 18.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 910 | 18.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 944 | 18.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 945 | 18.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 952 | 18.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 976 | 18.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 977 | 18.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 978 | 18.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |