BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0229300 Os06g0229300|AK101428
(792 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19510.1 | chr3:6763205-6766049 REVERSE LENGTH=724 287 1e-77
AT4G29940.1 | chr4:14648346-14652710 REVERSE LENGTH=797 217 2e-56
AT3G01460.1 | chr3:173316-182038 FORWARD LENGTH=2177 50 3e-06
>AT3G19510.1 | chr3:6763205-6766049 REVERSE LENGTH=724
Length = 723
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 127/185 (68%), Positives = 150/185 (81%)
Query: 154 DDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRI 213
D+Y I+K++RY LNR+NYEQSLI AY+ EGWKG SLEKIRPEKELERA EILR K +I
Sbjct: 175 DEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKI 234
Query: 214 REAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFH 273
R+ F++LD+L +EG L ES+FD+ GEISSEDIFCA CGSKD+++ NDIILCDG CDRGFH
Sbjct: 235 RDLFQHLDTLCAEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFH 294
Query: 274 QYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAASFL 333
QYCL PPL EDIP DEGWLCP CDCK D +D+LN+ G K S+ DSWEK+FPEAA+ L
Sbjct: 295 QYCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAAL 354
Query: 334 NGSKQ 338
G Q
Sbjct: 355 VGGGQ 359
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 47/187 (25%)
Query: 502 LEQDMVLP-----ISSKRQVERLDYKKLYNEAY-------------------GKASSDSS 537
LE D+ L +S +R VERLDYKKLY+E Y GK S+S
Sbjct: 501 LESDVGLDDGPAGVSRRRNVERLDYKKLYDEEYDNVPTSSSDDDDWDKTARMGKEDSESE 560
Query: 538 DDEEWYGNSTPEK--GNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSV 595
D+ G++ P K N ED + L S+RA + + PQ PG +
Sbjct: 561 DE----GDTVPLKQSSNAEDHTSKKLIRK-------SKRADKK--DTLEMPQE-GPGENG 606
Query: 596 SDQQTEVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVT 655
+ E S++ + P Q+L F+E+ YP +ATKE+LA+EL +T QV
Sbjct: 607 GSGEIE------KSSSSACKQTDPKT-QRLYISFQENQYPDKATKESLAKELQMTVKQVN 659
Query: 656 KWFSSTR 662
WF R
Sbjct: 660 NWFKHRR 666
>AT4G29940.1 | chr4:14648346-14652710 REVERSE LENGTH=797
Length = 796
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 125/184 (67%)
Query: 154 DDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRI 213
DD L +++R RY+L +M +Q+LI AYA+EGWKGQS EKIRP+KELERA+ EIL CK +
Sbjct: 100 DDSLRLQRRTRYLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGL 159
Query: 214 REAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFH 273
R+A R LD L S G ++E + S G I + IFCA C S++ NDIILCDG C+R FH
Sbjct: 160 RDAIRQLDLLSSVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDIILCDGTCNRAFH 219
Query: 274 QYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAASFL 333
Q CL+PPL E IP GD+GW C CDCKI+ ID +N G + +W+ +F E AS
Sbjct: 220 QKCLDPPLETESIPPGDQGWFCKFCDCKIEIIDTMNAQIGTHFPVDSNWQDIFNEEASLP 279
Query: 334 NGSK 337
GS+
Sbjct: 280 IGSE 283
>AT3G01460.1 | chr3:173316-182038 FORWARD LENGTH=2177
Length = 2176
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 9/53 (16%)
Query: 247 CAACG-SKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPAC 298
C CG KD + ++LCD CD +H YCLNPPL+ IP G+ W CP+C
Sbjct: 1290 CKVCGVDKD---DDSVLLCD-TCDAEYHTYCLNPPLIR--IPDGN--WYCPSC 1334
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,680,312
Number of extensions: 649376
Number of successful extensions: 1979
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 5
Length of query: 792
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 686
Effective length of database: 8,200,473
Effective search space: 5625524478
Effective search space used: 5625524478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 116 (49.3 bits)