BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0229300 Os06g0229300|AK101428
(792 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0229300 Similar to Hox2b protein 1387 0.0
Os02g0147800 Similar to Homeo protein (Fragment) 129 8e-30
>Os06g0229300 Similar to Hox2b protein
Length = 792
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/792 (86%), Positives = 688/792 (86%)
Query: 1 MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTYP 60
MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTYP
Sbjct: 1 MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTYP 60
Query: 61 LRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRSKPLRPAPSRVLRSTSEKK 120
LRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRSKPLRPAPSRVLRSTSEKK
Sbjct: 61 LRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRSKPLRPAPSRVLRSTSEKK 120
Query: 121 NKAHNELLNDGAGVQPAEXXXXXXXXXXXXXXXDDYLMIRKRVRYVLNRMNYEQSLIQAY 180
NKAHNELLNDGAGVQPAE DDYLMIRKRVRYVLNRMNYEQSLIQAY
Sbjct: 121 NKAHNELLNDGAGVQPAEKKRKVGRPPKGGTPKDDYLMIRKRVRYVLNRMNYEQSLIQAY 180
Query: 181 ASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEI 240
ASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEI
Sbjct: 181 ASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEI 240
Query: 241 SSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDC 300
SSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDC
Sbjct: 241 SSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDC 300
Query: 301 KIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIXXXXXXXXXXXXXXXXXTLAQ 360
KIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLNGSKQI TLAQ
Sbjct: 301 KIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQ 360
Query: 361 GHKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSQNGRTVDDLGLPSEDSEDGDF 420
GHKV TSQNGRTVDDLGLPSEDSEDGDF
Sbjct: 361 GHKVDEEKSSGEDGGEGLDSDDSSSEDSESSEKEKSKTSQNGRTVDDLGLPSEDSEDGDF 420
Query: 421 DPAGPDSDKXXXXXXXXXXXXXXXXXXXXXXFCAEIAKSCGQDEISGPSSSQIRTVDRTD 480
DPAGPDSDK FCAEIAKSCGQDEISGPSSSQIRTVDRTD
Sbjct: 421 DPAGPDSDKEQNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTD 480
Query: 481 GSGFDGEPNAENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDE 540
GSGFDGEPNAENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDE
Sbjct: 481 GSGFDGEPNAENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDE 540
Query: 541 EWYGNSTPEKGNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQT 600
EWYGNSTPEKGNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQT
Sbjct: 541 EWYGNSTPEKGNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQT 600
Query: 601 EVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSS 660
EVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSS
Sbjct: 601 EVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSS 660
Query: 661 TRHYARVAATKKXXXXXXXXXXXXXXXXXVDSIQLRGSNDIVSVDRNDMVSEERTGQSNL 720
TRHYARVAATKK VDSIQLRGSNDIVSVDRNDMVSEERTGQSNL
Sbjct: 661 TRHYARVAATKKENNIENHTAENNNNTNTVDSIQLRGSNDIVSVDRNDMVSEERTGQSNL 720
Query: 721 NEGTPLRSDTSCGQSVAVTPMVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKA 780
NEGTPLRSDTSCGQSVAVTPMVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKA
Sbjct: 721 NEGTPLRSDTSCGQSVAVTPMVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKA 780
Query: 781 VQRELRKMKTGR 792
VQRELRKMKTGR
Sbjct: 781 VQRELRKMKTGR 792
>Os02g0147800 Similar to Homeo protein (Fragment)
Length = 681
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 4/184 (2%)
Query: 154 DDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRI 213
D+ + KR RY+L ++ EQ+L+ AY+ +GW G S EKI+PEKEL+RAK +I++ K I
Sbjct: 102 DEVSRMEKRARYLLIKIKQEQNLLDAYSGDGWNGHSREKIKPEKELQRAKKQIMKYKIAI 161
Query: 214 REAFRNLDSLLSEGKLDESMFDSAG---EISSEDIFCAACGSKDVTLKNDIILCDGICDR 270
R+ LD S G D+S+ G ++ E C+ C S + N+II C+G C
Sbjct: 162 RDVIHQLDLCSSSGSKDDSVIPPDGCHESVNPEHTICSRCKSHESFPDNNIIFCEGGCKL 221
Query: 271 GFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAA 330
HQ CL PP + +P G LC C K+ +D +N G ++ +F EAA
Sbjct: 222 ACHQKCLEPP-FDKILPTTRHGRLCKHCSSKMKILDAINAHLGTSFTVKCPSSDIFKEAA 280
Query: 331 SFLN 334
N
Sbjct: 281 EHFN 284
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,208,332
Number of extensions: 986569
Number of successful extensions: 2644
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2636
Number of HSP's successfully gapped: 2
Length of query: 792
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 683
Effective length of database: 11,344,475
Effective search space: 7748276425
Effective search space used: 7748276425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)