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Os06g0223700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.44 (0.0271) R2 : 0.907
β1 : 0.818 (0.102) R2dD : 0.0147 R2D : 0.0186
β2 : 0.966 (0.0924) R2dC : 0.045 R2C : 0.272
β3 : -2.91 (0.0762) R2dE : 0.597 R2E : 0.823
β4 : 2.77 (0.449) R2dD*C : 0.0232 R2D*C : -0.0277
β5 : 2.78 (0.375) R2dD*E : 0.0336 R2D*E : -0.011
γ1 : 0.283 (0.0576) R2dN8 : 0.00666 R2N8 : 0.00833
σ : 0.505
deviance : 115.63
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_____
C
peak time of C : 9.59
E
wheather : radiation
threshold : 0.47
memory length : 191
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.7
open length of G : 22.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.63 0.505 9.44 0.818 0.966 -2.91 2.77 2.78 0.283 9.59 0.47 191 5.7 22.1
133.6 0.538 9.4 0.971 0.918 -3.13 1.72 -- 0.258 7.73 0.399 176 5.82 22.2
136.42 0.544 9.4 0.996 0.832 -3.02 -- 2.01 0.352 8.37 0.6304 187 5.81 22.2
128.38 0.528 9.45 1.04 0.845 -2.96 -- -- 0.265 9.6 0.3999 175 5.39 22.3
151.58 0.573 9.39 0.735 -- -3.5 -- 0.888 0.284 -- 0.78 194 5.48 21.9
214.16 0.686 9.33 1.31 3.95 -- -0.574 -- 0.556 11.9 -- -- -- --
215.59 0.688 9.33 1.28 3.95 -- -- -- 0.554 11.9 -- -- -- --
153.26 0.577 9.41 0.999 -- -3.52 -- -- 0.339 -- 0.96 193 5.55 21.8
153.56 0.577 9.45 -- 0.886 -2.94 -- -- 0.222 9.68 0.3978 176 5.4 22.3
1197.2 1.62 9.41 1.16 -- -- -- -- 0.502 -- -- -- -- --
258.89 0.753 9.36 -- 3.93 -- -- -- 0.411 11.9 -- -- -- --
171.07 0.609 9.46 -- -- -3.5 -- -- 0.208 -- 0.3983 167 5.12 22.5
1232.9 1.64 9.44 -- -- -- -- -- 0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.30 radiation 1.0 90 < th dose dependent sin 12 NA
3 131.97 radiation 1.0 270 < th dose dependent rect. 5 22
4 132.46 radiation 1.0 270 < th dose independent rect. 6 21
5 132.88 temperature 10.0 10 > th dose dependent rect. 5 15
6 133.14 radiation 1.0 30 < th dose dependent rect. 19 23
7 133.30 radiation 1.0 30 < th dose independent sin 11 NA
22 137.34 radiation 1.0 30 > th dose independent sin 11 NA
39 139.14 radiation 1.0 30 < th dose independent rect. 19 22
76 143.64 radiation 1.0 30 < th dose dependent rect. 19 19
87 144.80 precipitation 0.1 90 < th dose independent rect. 4 15
88 144.80 precipitation 0.1 90 < th dose dependent rect. 4 15
103 145.68 radiation 1.0 30 < th dose independent rect. 19 19
108 145.82 radiation 1.0 30 < th dose dependent rect. 19 17
112 146.04 radiation 1.0 30 < th dose dependent rect. 19 13
122 146.50 radiation 1.0 30 > th dose independent rect. 17 15
126 147.22 radiation 1.0 30 < th dose dependent rect. 19 11
136 147.85 radiation 1.0 30 < th dose independent rect. 19 17
142 147.88 temperature 15.0 90 > th dose independent rect. 4 15
148 148.08 radiation 1.0 30 < th dose independent rect. 19 13
160 148.47 humidity 50.0 10 > th dose dependent rect. 19 10
173 149.12 wind 9.0 90 < th dose independent rect. 19 9
175 149.18 radiation 1.0 30 < th dose independent rect. 19 11
177 149.19 temperature 10.0 90 > th dose independent rect. 19 9
178 149.19 temperature 30.0 90 < th dose independent rect. 19 9
179 149.19 humidity 50.0 90 > th dose independent rect. 19 9
181 149.19 atmosphere 995.0 90 > th dose independent rect. 19 9
182 149.19 radiation 1.0 90 < th dose independent rect. 19 9
188 149.19 atmosphere 1015.0 90 < th dose independent rect. 4 15
189 149.19 radiation 1.0 90 < th dose dependent rect. 19 9
198 149.30 humidity 70.0 10 > th dose independent rect. 19 10
208 149.57 radiation 1.0 90 < th dose dependent rect. 17 23
222 150.03 atmosphere 995.0 90 > th dose independent rect. 4 15
224 150.11 radiation 1.0 90 < th dose dependent rect. 13 23
237 150.56 radiation 1.0 90 < th dose dependent no NA NA
239 150.58 radiation 1.0 90 < th dose dependent rect. 9 23
270 151.12 radiation 1.0 90 < th dose dependent rect. 15 23
291 151.73 wind 9.0 90 < th dose independent rect. 4 15
351 152.40 humidity 50.0 270 > th dose independent rect. 17 10
407 153.41 wind 9.0 270 < th dose independent rect. 17 10
408 153.43 precipitation 0.1 90 < th dose independent rect. 19 9
409 153.43 precipitation 0.1 90 < th dose dependent rect. 19 9
441 154.09 humidity 50.0 10 > th dose dependent rect. 9 20
442 154.18 radiation 1.0 30 > th dose independent rect. 5 3
463 154.24 temperature 10.0 270 > th dose independent rect. 17 10
464 154.24 radiation 20.0 270 < th dose independent rect. 17 10
477 154.51 atmosphere 1015.0 90 < th dose independent rect. 19 9
483 154.74 wind 7.0 10 < th dose dependent rect. 5 4
513 155.39 wind 9.0 270 < th dose independent rect. 6 22
538 155.69 humidity 80.0 10 > th dose independent rect. 10 19
540 155.78 wind 3.0 30 < th dose independent rect. 5 4
568 155.99 wind 9.0 270 < th dose dependent rect. 4 2
618 156.81 precipitation 0.1 270 < th dose independent rect. 4 2
619 156.81 precipitation 0.1 270 < th dose dependent rect. 4 2
621 156.85 wind 5.0 270 < th dose independent rect. 4 2
626 156.99 wind 9.0 90 < th dose dependent rect. 19 9
630 157.07 radiation 1.0 30 > th dose independent rect. 14 19
631 157.09 precipitation 0.1 270 < th dose independent rect. 3 4
632 157.09 precipitation 0.1 270 < th dose dependent rect. 3 4
665 157.57 atmosphere 995.0 270 > th dose independent rect. 17 10
667 157.59 radiation 10.0 270 < th dose independent rect. 4 2
677 157.69 wind 9.0 270 < th dose independent rect. 7 20
690 157.82 temperature 10.0 270 > th dose dependent rect. 4 2
700 157.99 temperature 10.0 10 > th dose dependent rect. 5 3
705 158.01 atmosphere 1010.0 270 < th dose independent rect. 4 2
710 158.11 temperature 10.0 270 > th dose independent rect. 4 2
712 158.11 temperature 30.0 270 < th dose independent rect. 4 2
713 158.11 humidity 50.0 270 > th dose independent rect. 4 2
716 158.11 atmosphere 995.0 270 > th dose independent rect. 4 2
721 158.11 temperature 10.0 270 > th dose independent rect. 6 22
733 158.31 wind 5.0 270 < th dose independent rect. 3 4
766 158.41 humidity 50.0 270 > th dose dependent rect. 4 2
783 158.64 wind 9.0 90 < th dose independent rect. 9 19
790 158.74 radiation 40.0 270 < th dose dependent rect. 4 2
794 158.80 radiation 20.0 90 < th dose independent rect. 4 5
803 158.89 precipitation 0.1 10 < th dose independent rect. 5 3
804 158.89 precipitation 0.1 10 < th dose dependent rect. 5 3
810 158.96 temperature 10.0 10 > th dose dependent rect. 5 19
849 159.28 wind 9.0 10 < th dose independent rect. 8 21
851 159.32 radiation 40.0 10 < th dose independent rect. 5 3
855 159.33 temperature 10.0 10 > th dose independent rect. 5 3
857 159.33 temperature 30.0 10 < th dose independent rect. 5 3
858 159.33 humidity 50.0 10 > th dose independent rect. 5 3
860 159.33 atmosphere 995.0 10 > th dose independent rect. 5 3
861 159.33 atmosphere 1015.0 10 < th dose independent rect. 5 3
862 159.33 temperature 10.0 10 > th dose independent rect. 8 21
865 159.36 radiation 40.0 90 < th dose independent rect. 4 5
898 159.48 humidity 60.0 90 > th dose independent rect. 4 5
902 159.49 temperature 10.0 90 > th dose independent rect. 4 5
905 159.49 atmosphere 995.0 90 > th dose independent rect. 4 5
906 159.49 atmosphere 1015.0 90 < th dose independent rect. 4 5
907 159.49 temperature 10.0 90 > th dose independent rect. 9 19
909 159.50 temperature 30.0 90 < th dose independent rect. 4 5
924 159.60 temperature 10.0 270 > th dose independent rect. 7 20
946 159.90 radiation 40.0 270 < th dose dependent rect. 3 4
986 160.25 humidity 50.0 270 > th dose dependent rect. 3 4