BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0223700 Os06g0223700|AK070214
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 74 2e-14
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 70 3e-13
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 61 1e-10
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 60 5e-10
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 58 2e-09
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 58 2e-09
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 55 9e-09
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 54 3e-08
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 53 5e-08
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 53 5e-08
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 50 3e-07
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 49 6e-07
AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325 49 1e-06
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 47 4e-06
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 46 7e-06
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 61 RRHSGDFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEK 119
RRHSGDF+ + FL++C +C R L PGRD ++Y G+ AFCS ECRQ+QM DE EK
Sbjct: 77 RRHSGDFS--DAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEK 133
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 60 QRRHSGDFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEK 119
QRRHS D++ FL++C +C R L GRD ++Y G+ AFCS ECRQQQ+ +DE EK
Sbjct: 67 QRRHSSDYS----EDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEK 122
Query: 120 K 120
K
Sbjct: 123 K 123
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 70 AETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDE 115
+ ++FL CG C R L PGRD ++Y G+ AFCS ECR+QQM DE
Sbjct: 68 SSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDE 113
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 75 FLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEKK 120
FL +C +C +RLG RD F+Y G+ FCS ECR++Q+ DE EKK
Sbjct: 76 FLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEKK 121
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 61 RRHSGDFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEKK 120
R H F + + FL +C +C + LG RD ++Y G+ FCS ECRQ+Q+ DE EKK
Sbjct: 84 RFHDFRFDI-QQPHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKK 142
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 59 MQRRHSGDFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNE 118
M +SG F E FL++C +C + LG D F+Y G+ AFCS+ECR++Q+ DE E
Sbjct: 1 MASYYSG-FLGCEEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKE 59
Query: 119 KK 120
+K
Sbjct: 60 RK 61
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 75 FLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEKKCF 122
FLK C +CNR L RD ++Y G AFCS ECR++Q+ LDE K F
Sbjct: 57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKKAKTGF 104
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 71 ETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDE 115
+ + FL+ C +C R+L P +D ++Y G+ AFCS ECR +QM +DE
Sbjct: 64 QDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDE 108
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 75 FLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNE 118
FLK C +CN++L +D ++Y G++ FCS ECR+ QM +D+ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 75 FLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNE 118
FLK C +CN++L +D ++Y G++ FCS ECR+ QM +D+ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 66 DFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEKK 120
D + +FL C C + LGP D F+Y G+ AFCS ECR +M + E N+ K
Sbjct: 213 DSDYSPPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEENDTK 267
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 72 TAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDEL 116
T +FL C C + L +D +IY GE FCS ECR Q+M LD++
Sbjct: 217 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQM 261
>AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325
Length = 324
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 68 AVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDE 115
+V + FL C CN++LG G D ++Y E +FCS ECR ++M +DE
Sbjct: 260 SVFPSDNFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEMMIDE 306
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 74 AFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEK 119
FL +C +C ++L G+D FIY GE AFCS ECR + DE E+
Sbjct: 181 GFLNSCYLCRKKLH-GQDIFIYRGEKAFCSTECRSSHIANDERKER 225
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 68 AVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEK 119
+V FL +C +C ++L G+D ++Y GE+ FCS ECR Q+ DE E+
Sbjct: 143 SVRGPTEFLSSCCLCKKKLQ-GKDIYMYKGEMGFCSAECRSVQIMNDERQEQ 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,992,234
Number of extensions: 52927
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 16
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 106 (45.4 bits)