Os06g0214100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0214100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.4 | 0.368 | 10 | -1.32 | 0.346 | -0.661 | -0.0546 | 3.05 | -0.17 | 12.5 | 2.133 | 1452 | -- | -- |
| 65.74 | 0.378 | 9.98 | -1.05 | 0.362 | -1.21 | -0.194 | -- | -0.117 | 12.7 | 0.4801 | 1452 | -- | -- |
| 61.41 | 0.365 | 10 | -1.32 | 0.346 | -0.662 | -- | 3.06 | -0.17 | 12.5 | 2.149 | 1452 | -- | -- |
| 65.83 | 0.378 | 9.98 | -1.05 | 0.34 | -1.22 | -- | -- | -0.118 | 12.6 | 0.48 | 1457 | -- | -- |
| 65.51 | 0.377 | 10 | -1.25 | -- | -1.04 | -- | 2.64 | -0.178 | -- | 2.116 | 1536 | -- | -- |
| 80.81 | 0.421 | 9.94 | -0.724 | 0.392 | -- | -0.281 | -- | 0.0408 | 12.5 | -- | -- | -- | -- |
| 81.15 | 0.422 | 9.95 | -0.735 | 0.392 | -- | -- | -- | 0.0393 | 12.4 | -- | -- | -- | -- |
| 67.84 | 0.384 | 9.99 | -1.06 | -- | -1.45 | -- | -- | -0.133 | -- | 0.5258 | 1536 | -- | -- |
| 90.51 | 0.443 | 9.97 | -- | 0.362 | -0.69 | -- | -- | 0.00563 | 12.9 | 1.31 | 1452 | -- | -- |
| 90.82 | 0.445 | 9.95 | -0.749 | -- | -- | -- | -- | 0.0329 | -- | -- | -- | -- | -- |
| 95.4 | 0.457 | 9.93 | -- | 0.403 | -- | -- | -- | 0.121 | 12.5 | -- | -- | -- | -- |
| 92.48 | 0.448 | 9.94 | -- | -- | -0.372 | -- | -- | 0.101 | -- | 7.64 | 101 | -- | -- |
| 105.6 | 0.48 | 9.93 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 3 | 60.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 5 | 60.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 9 | 60.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 17 | 60.80 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 18 | 60.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 28 | 60.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 32 | 60.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 38 | 60.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 39 | 60.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 44 | 60.96 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 45 | 60.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 55 | 60.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 59 | 61.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 68 | 61.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 170 | 61.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 198 | 61.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 205 | 61.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 206 | 61.78 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 208 | 61.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 283 | 61.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 286 | 61.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 288 | 61.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 291 | 61.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 299 | 61.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 307 | 61.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 321 | 61.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 324 | 61.92 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 341 | 61.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 357 | 61.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 363 | 61.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 396 | 62.00 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 422 | 62.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 424 | 62.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 426 | 62.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 427 | 62.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 431 | 62.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 432 | 62.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 440 | 62.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 478 | 62.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 498 | 62.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 526 | 62.32 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 547 | 62.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 550 | 62.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 583 | 62.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 590 | 62.48 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 651 | 62.58 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 652 | 62.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 659 | 62.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 692 | 62.69 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 806 | 63.00 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 809 | 63.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 810 | 63.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 825 | 63.14 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 838 | 63.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 863 | 63.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 871 | 63.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 878 | 63.50 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 931 | 63.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 933 | 63.93 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 947 | 64.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 972 | 64.16 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |