BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0214100 Os06g0214100|AK064799
         (333 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33380.1  | chr4:16072064-16074605 FORWARD LENGTH=329          294   5e-80

>AT4G33380.1 | chr4:16072064-16074605 FORWARD LENGTH=329
          Length = 328

 Score =  294 bits (752), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 196/311 (63%), Gaps = 3/311 (0%)

Query: 23  TYRRVTVAVCLGNLVAVLLVVRSLYSAPGYFASAPRRVAVKYSEEQIRLVEESIRIRRAA 82
           +++R+T+ VC  N++  L V+R LY++  +  S    V VKY+ ++IR +EESIRIRR+ 
Sbjct: 19  SFKRITLLVCFFNILIALFVLRFLYASSLHIYSNNDNV-VKYTADEIRKMEESIRIRRSK 77

Query: 83  VSVELVEAVKKLEKVFAXXXXXXXXXXXXXXQKVSYEILERMRDLGENSNTTEQREALES 142
               +++ VKKL K                  K+  EIL+R++   + SN T+ RE +E+
Sbjct: 78  EPTLILQLVKKL-KHEVSTAESSTELSPNVKHKLVDEILQRLKSFEDKSNVTQLREVVET 136

Query: 143 WRLEKLKDIRS-ASAQNLSMSDLSNEESRMLKRALELNWRMLMDDIGLWIPVSVWHTEHD 201
           WR EKL++ +     QN   S L  EE+ ML RALEL W +L ++IG W+P  V + EHD
Sbjct: 137 WRNEKLEEAKELIQGQNGVNSTLIVEEAGMLVRALELEWDVLSEEIGFWLPAEVTNVEHD 196

Query: 202 DKXXXXXXXXXXXXXXXXXXXCNAQVHTDYGGAAVRWGLTHHKESXXXXXXXXXXXXKRA 261
           DK                   CNA++HTDYGGAAVRWGLTHHKES            KRA
Sbjct: 197 DKPEGEEEPEEILAGRPVPAVCNAELHTDYGGAAVRWGLTHHKESAADCCQACLDQAKRA 256

Query: 262 RPGALKCNIWVYCPSEYGCYSPDKYEHKHQECWLKQADHPKLNFKDRYSESYRDAHPSAP 321
           +PG  +CNIWVYCPSE+GC+SPD YEHKHQECWLK A+ PK NFKDRYSE+YR+ HP AP
Sbjct: 257 KPGETRCNIWVYCPSEFGCFSPDIYEHKHQECWLKYAEKPKQNFKDRYSETYRNNHPKAP 316

Query: 322 VVVPWMSGVIT 332
            +VPW+SGV+T
Sbjct: 317 SIVPWVSGVVT 327



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,832,149
Number of extensions: 200511
Number of successful extensions: 583
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)