Os06g0206200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0206200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.77 | 0.204 | 11 | 1.2 | 0.0772 | -0.907 | -0.0832 | 2.52 | 0.483 | 23.6 | 22.85 | 1651 | -- | -- |
| 22.23 | 0.22 | 11 | 0.754 | 0.0975 | -0.906 | 0.006 | -- | 0.474 | 2.04 | 17.5 | 9060 | -- | -- |
| 18.74 | 0.202 | 11 | 1.19 | 0.0821 | -0.879 | -- | 2.37 | 0.481 | 1.08 | 22.63 | 1580 | -- | -- |
| 22.17 | 0.219 | 11 | 0.738 | 0.0892 | -0.904 | -- | -- | 0.447 | 1.76 | 17.3 | 9053 | -- | -- |
| 19.13 | 0.204 | 11 | 1.19 | -- | -0.888 | -- | 2.41 | 0.483 | -- | 22.62 | 1620 | -- | -- |
| 39.1 | 0.293 | 11.1 | 0.22 | 0.0737 | -- | -0.0712 | -- | 0.128 | 2.25 | -- | -- | -- | -- |
| 39.12 | 0.293 | 11.1 | 0.222 | 0.074 | -- | -- | -- | 0.129 | 2.42 | -- | -- | -- | -- |
| 22.73 | 0.222 | 11 | 0.733 | -- | -0.882 | -- | -- | 0.44 | -- | 17.3 | 8987 | -- | -- |
| 29.33 | 0.252 | 11.1 | -- | 0.0829 | -0.497 | -- | -- | 0.152 | 1.39 | 25.5 | 6060 | -- | -- |
| 39.44 | 0.293 | 11.1 | 0.225 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 40.42 | 0.297 | 11.1 | -- | 0.0782 | -- | -- | -- | 0.104 | 2.46 | -- | -- | -- | -- |
| 29.32 | 0.252 | 11.1 | -- | -- | -0.496 | -- | -- | 0.222 | -- | 26.11 | 7460 | -- | -- |
| 40.78 | 0.298 | 11.1 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 33 | 18.98 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 78 | 19.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 89 | 19.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 201 | 19.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 254 | 19.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 264 | 19.59 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 268 | 19.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 448 | 19.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 519 | 19.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 536 | 19.95 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 554 | 19.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 557 | 19.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 558 | 19.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 563 | 19.99 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 567 | 19.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 574 | 20.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 584 | 20.01 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 591 | 20.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 611 | 20.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 14 |
| 658 | 20.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 676 | 20.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 683 | 20.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 692 | 20.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 697 | 20.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 708 | 20.14 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 716 | 20.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 727 | 20.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 787 | 20.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 797 | 20.19 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 803 | 20.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 807 | 20.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 847 | 20.21 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 880 | 20.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 887 | 20.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 898 | 20.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 926 | 20.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 944 | 20.27 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 947 | 20.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 972 | 20.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 974 | 20.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |