BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0206200 Os06g0206200|AK072718
(159 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41945.3 | chr2:17509933-17512898 REVERSE LENGTH=205 156 6e-39
AT5G18250.1 | chr5:6033797-6035216 FORWARD LENGTH=134 49 2e-06
AT3G04040.1 | chr3:1047754-1049026 FORWARD LENGTH=139 48 2e-06
>AT2G41945.3 | chr2:17509933-17512898 REVERSE LENGTH=205
Length = 204
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 103/193 (53%), Gaps = 40/193 (20%)
Query: 1 MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA 60
MGTR+VYEEKLR G +L DPTMNPGLGSARCPRCLSLL PNS +G+W IT VLHDA A
Sbjct: 1 MGTRQVYEEKLRRG-NLDYDPTMNPGLGSARCPRCLSLLNPNSE-KGEWTITPVLHDAAA 58
Query: 61 VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWXXXXXXXXXXXXFSGTSALFG------- 113
VAGSG G +LSAVH FNTGIP++Q G K +SG A FG
Sbjct: 59 VAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGESLQAAI 118
Query: 114 -------------------------------AYALPTFAQLTVTXXXXXXXXXXXXVSQI 142
YALP FAQLTVT +S +
Sbjct: 119 SFPIVWLEYESRCAAQCRIATFTFSLLFDVPGYALPKFAQLTVTSYYASSSASHYGISML 178
Query: 143 TRQIERSHLSDTN 155
TR+IE +HLS T
Sbjct: 179 TRRIEEAHLSRTQ 191
>AT5G18250.1 | chr5:6033797-6035216 FORWARD LENGTH=134
Length = 133
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 31 RCPRCLSLLTPNSSGEGDWAITSVLHDATAVAGSGAGAMLSAVHGFNTGIPFVQKHVKGP 90
RC C LT N W + + D+ ++ GS G SA GFN +P V+K +KGP
Sbjct: 11 RCHHCAGPLTRNLE-TSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGP 69
Query: 91 KWXXXXXXXXXXXXFSGTSALFGAYALPTFAQL 123
W S A +P AQL
Sbjct: 70 MWLHFLVGAPPVIVLSSACAGLAGGTVPALAQL 102
>AT3G04040.1 | chr3:1047754-1049026 FORWARD LENGTH=139
Length = 138
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 30 ARCPRCLSLLTPNSSGEGDWAITSVLHDATAVAGSGAGAMLSAVHGFNTGIPFVQKHVKG 89
+RC C LT N +W + + D+ ++ GS G SA GF+ +P V+K +KG
Sbjct: 14 SRCHHCAGPLTKNLE-TNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKG 72
Query: 90 PKWXXXXXXXXXXXXFSGTSALFGAYALPTFAQL 123
P W S A A+P AQL
Sbjct: 73 PMWLHFLVGAPPVIVVSSACAGLAGGAVPALAQL 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,929,203
Number of extensions: 98461
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)