BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0206200 Os06g0206200|AK072718
         (159 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0206200  Conserved hypothetical protein                      274   2e-74
AK059219                                                          273   3e-74

>Os06g0206200 Conserved hypothetical protein
          Length = 159

 Score =  274 bits (700), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 135/159 (84%)

Query: 1   MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA 60
           MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA
Sbjct: 1   MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA 60

Query: 61  VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWXXXXXXXXXXXXFSGTSALFGAYALPTF 120
           VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKW            FSGTSALFGAYALPTF
Sbjct: 61  VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWLQLLVGVPPLLLFSGTSALFGAYALPTF 120

Query: 121 AQLTVTXXXXXXXXXXXXVSQITRQIERSHLSDTNGNSR 159
           AQLTVT            VSQITRQIERSHLSDTNGNSR
Sbjct: 121 AQLTVTSYYAASSASHYAVSQITRQIERSHLSDTNGNSR 159



>AK059219 
          Length = 209

 Score =  273 bits (698), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 135/159 (84%)

Query: 1   MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA 60
           MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA
Sbjct: 51  MGTREVYEEKLRSGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATA 110

Query: 61  VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWXXXXXXXXXXXXFSGTSALFGAYALPTF 120
           VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKW            FSGTSALFGAYALPTF
Sbjct: 111 VAGSGAGAMLSAVHGFNTGIPFVQKHVKGPKWLQLLVGVPPLLLFSGTSALFGAYALPTF 170

Query: 121 AQLTVTXXXXXXXXXXXXVSQITRQIERSHLSDTNGNSR 159
           AQLTVT            VSQITRQIERSHLSDTNGNSR
Sbjct: 171 AQLTVTSYYAASSASHYAVSQITRQIERSHLSDTNGNSR 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,866,933
Number of extensions: 182887
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)