Os06g0196300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxiredoxin Q (Fragment).
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Os06g0196300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxiredoxin Q (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.13 | 0.415 | 15.2 | -0.881 | 0.817 | -0.693 | -0.294 | -0.37 | -0.891 | 20.8 | 70.03 | 1545 | -- | -- |
| 78.37 | 0.412 | 15.2 | -0.929 | 0.812 | -0.723 | -0.306 | -- | -0.907 | 20.9 | 70 | 1551 | -- | -- |
| 78.41 | 0.412 | 15.2 | -0.868 | 0.816 | -0.695 | -- | -0.388 | -0.89 | 20.8 | 70.01 | 1551 | -- | -- |
| 78.35 | 0.412 | 15.2 | -0.906 | 0.807 | -0.72 | -- | -- | -0.911 | 21 | 71.45 | 1554 | -- | -- |
| 89.62 | 0.441 | 15.2 | -0.897 | -- | -1.1 | -- | 0.000496 | -0.859 | -- | 74 | 818 | -- | -- |
| 95.01 | 0.457 | 15.2 | -0.792 | 0.814 | -- | -0.299 | -- | -0.813 | 20.6 | -- | -- | -- | -- |
| 95.3 | 0.457 | 15.2 | -0.783 | 0.814 | -- | -- | -- | -0.813 | 20.6 | -- | -- | -- | -- |
| 89.59 | 0.441 | 15.2 | -0.916 | -- | -1.12 | -- | -- | -0.871 | -- | 73.98 | 818 | -- | -- |
| 99.64 | 0.465 | 15.2 | -- | 0.808 | -0.617 | -- | -- | -0.797 | 20.9 | 71.49 | 1587 | -- | -- |
| 132.53 | 0.538 | 15.2 | -0.786 | -- | -- | -- | -- | -0.821 | -- | -- | -- | -- | -- |
| 111.45 | 0.494 | 15.2 | -- | 0.817 | -- | -- | -- | -0.726 | 20.5 | -- | -- | -- | -- |
| 111.4 | 0.492 | 15.2 | -- | -- | -1.08 | -- | -- | -0.815 | -- | 75 | 790 | -- | -- |
| 148.81 | 0.569 | 15.1 | -- | -- | -- | -- | -- | -0.733 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 75.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 22 | 76.67 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 25 | 76.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 28 | 76.78 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 42 | 76.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 64 | 77.19 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 65 | 77.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 75 | 77.28 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 91 | 77.39 | humidity | 60 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 129 | 77.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 161 | 77.66 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 197 | 77.82 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 287 | 78.09 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 357 | 78.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 363 | 78.25 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 498 | 78.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 537 | 78.55 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 566 | 78.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 635 | 78.64 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 648 | 78.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 692 | 78.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 998 | 79.06 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |