BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0196300 Os06g0196300|AK059845
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26060.2  | chr3:9524807-9526123 FORWARD LENGTH=218            269   8e-73
AT5G06290.1  | chr5:1919380-1921211 FORWARD LENGTH=274             79   2e-15
AT3G11630.1  | chr3:3672189-3673937 FORWARD LENGTH=267             75   2e-14
AT1G48130.1  | chr1:17780610-17781500 FORWARD LENGTH=217           49   1e-06

>AT3G26060.2 | chr3:9524807-9526123 FORWARD LENGTH=218
          Length = 217

 Score =  269 bits (687), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 138/152 (90%)

Query: 65  IVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYE 124
           I   +V+KG AAP+FTL+DQ+G+ VSL K+KG+PVV+YFYPADETPGCTKQACAFRDSYE
Sbjct: 65  IFAKQVNKGQAAPDFTLKDQNGKPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYE 124

Query: 125 KFKKAGAEVIGISGDDAASHKEFKKKYKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQT 184
           KFKKAGAEVIGISGDD+ASHK F  KYKLP+TLLSDEGNKVRK+WGVP DLFG LPGRQT
Sbjct: 125 KFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQT 184

Query: 185 YVLDKNGVVQYIYNNQFQPEKHIGETLKILQS 216
           YVLDKNGVVQ IYNNQFQPEKHI ETLK L++
Sbjct: 185 YVLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 216



>AT5G06290.1 | chr5:1919380-1921211 FORWARD LENGTH=274
          Length = 273

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 73  GSAAPNF---TLRDQDGRAVSLSKFKGRP-VVVYFYPADETPGCTKQACAFRDSYEKFKK 128
           G+ AP+F    + DQ+   V LS++ G+  V+++FYP D T  C  +  AF D YE+F+K
Sbjct: 83  GNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEK 142

Query: 129 AGAEVIGISGDDAASHKEFKKKYK-------LPFTLLSDEGNKVRKEWGVPADLFGTLPG 181
              EV+G+S D   SH  + +  +       L + L+SD    + K +GV     G +  
Sbjct: 143 LNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQG-IAL 201

Query: 182 RQTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQSL 217
           R  +++DK GV+Q+   N     + + ET++ LQ+L
Sbjct: 202 RGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQAL 237



>AT3G11630.1 | chr3:3672189-3673937 FORWARD LENGTH=267
          Length = 266

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 73  GSAAPNF---TLRDQDGRAVSLSKFKGRP-VVVYFYPADETPGCTKQACAFRDSYEKFKK 128
           G+ AP+F    + DQ+   V LS + G+  V+++FYP D T  C  +  AF D + +F+K
Sbjct: 76  GNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEK 135

Query: 129 AGAEVIGISGDDAASHKEFKKKYK-------LPFTLLSDEGNKVRKEWGVPADLFGTLPG 181
              EV+G+S D   SH  + +  +       L + L+SD    + K +GV     G +  
Sbjct: 136 LNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQG-IAL 194

Query: 182 RQTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQSL 217
           R  +++DK GV+Q+   N     + + ET++ LQ+L
Sbjct: 195 RGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQAL 230



>AT1G48130.1 | chr1:17780610-17781500 FORWARD LENGTH=217
          Length = 216

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 70  VSKGSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKA 129
           ++ G   PN  +     +      F     V++ +P D TP CT +  A      +F K 
Sbjct: 4   ITLGDTVPNLEVETTHDKFKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKR 63

Query: 130 GAEVIGISGDDAASHKEFKKKY-------KLPFTLLSDEGNKVRKEWGVPADLFGTLPGR 182
           G +++G+S DD  SHK++ K         K+ + +++D   ++  +  +  D     P R
Sbjct: 64  GVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNM-IDPIENGPSR 122

Query: 183 QTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQSL 217
             +++  +  ++  +       +++ E L+ L SL
Sbjct: 123 ALHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSL 157



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,929,620
Number of extensions: 164300
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 4
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)