Os06g0171800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Rad18-type putative domain containing protein.
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Os06g0171800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Rad18-type putative domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.54 | 0.637 | 4.71 | -1.13 | 0.306 | 0.899 | -0.917 | -1.19 | -0.222 | 5.31 | 20.9 | 852 | -- | -- |
| 187.01 | 0.637 | 4.68 | -0.899 | 0.301 | 1.03 | -0.797 | -- | -0.156 | 4.66 | 20.5 | 895 | -- | -- |
| 185.19 | 0.634 | 4.71 | -1.12 | 0.281 | 0.914 | -- | -1.19 | -0.199 | 4.76 | 20.7 | 904 | -- | -- |
| 188.64 | 0.64 | 4.68 | -0.897 | 0.294 | 1.05 | -- | -- | -0.154 | 4.47 | 20.5 | 897 | -- | -- |
| 189.19 | 0.641 | 4.71 | -1.13 | -- | 0.955 | -- | -1.15 | -0.199 | -- | 20.5 | 970 | -- | -- |
| 216.58 | 0.69 | 4.63 | -0.508 | 0.357 | -- | -0.833 | -- | 0.0763 | 3.43 | -- | -- | -- | -- |
| 218.58 | 0.692 | 4.63 | -0.493 | 0.352 | -- | -- | -- | 0.0815 | 2.82 | -- | -- | -- | -- |
| 192.97 | 0.647 | 4.68 | -0.908 | -- | 1.08 | -- | -- | -0.155 | -- | 20.54 | 967 | -- | -- |
| 206.85 | 0.67 | 4.64 | -- | 0.322 | 0.741 | -- | -- | -0.00311 | 4.12 | 20.62 | 752 | -- | -- |
| 225.74 | 0.702 | 4.63 | -0.478 | -- | -- | -- | -- | 0.0905 | -- | -- | -- | -- | -- |
| 224.98 | 0.702 | 4.62 | -- | 0.342 | -- | -- | -- | 0.136 | 2.81 | -- | -- | -- | -- |
| 211.29 | 0.677 | 4.65 | -- | -- | 0.728 | -- | -- | -0.0266 | -- | 21.39 | 882 | -- | -- |
| 231.76 | 0.711 | 4.61 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 8 | 182.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 18 | 182.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 21 | 182.99 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 24 | 183.03 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 38 | 183.20 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 40 | 183.24 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 42 | 183.31 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 46 | 183.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 50 | 183.37 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 56 | 183.46 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 58 | 183.48 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 63 | 183.50 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 68 | 183.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 75 | 183.59 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 84 | 183.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 10 |
| 90 | 183.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 98 | 183.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 118 | 183.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 155 | 183.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 179 | 183.91 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 192 | 183.93 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 209 | 183.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 21 |
| 247 | 184.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 264 | 184.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 294 | 184.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 355 | 184.25 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 377 | 184.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 22 |
| 420 | 184.36 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 452 | 184.41 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 459 | 184.42 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 461 | 184.42 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 486 | 184.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 525 | 184.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 526 | 184.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 568 | 184.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 655 | 184.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 696 | 184.72 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 744 | 184.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 803 | 184.87 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 839 | 184.92 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 875 | 184.99 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 883 | 185.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 887 | 185.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 889 | 185.01 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 896 | 185.02 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 900 | 185.03 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 905 | 185.04 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 912 | 185.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 927 | 185.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 931 | 185.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 939 | 185.08 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 955 | 185.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 981 | 185.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 985 | 185.14 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 988 | 185.15 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 10 |