BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0171800 Os06g0171800|AK120233
         (964 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48360.2  | chr1:17868661-17872946 FORWARD LENGTH=892          760   0.0  

>AT1G48360.2 | chr1:17868661-17872946 FORWARD LENGTH=892
          Length = 891

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/734 (50%), Positives = 512/734 (69%), Gaps = 17/734 (2%)

Query: 232 GRRFHENIELQEGASITLLRDPQNAKDPDAIKVLYAGYECEQMLGYLPRELAKVLAPLLD 291
           GR+F +  +L+ G  I LLR P+N KD +AIKV+    E   MLGYLP+++++ L+PL+D
Sbjct: 167 GRKFSDVQDLEIGGDIFLLRHPENVKDRNAIKVISGDSE---MLGYLPKDISQCLSPLID 223

Query: 292 RHYIECEGCVVGVPEQQLDHVPIQLKCQKYTD----ENETYDDLKHPQFLWENFICAVGN 347
            + ++ EG +  VP++  + V I++ C K       E E Y D K    LWE  +  V +
Sbjct: 224 DYDLKFEGTITSVPKKSSEAVLIKVVCHKMRSDGWKECELYGDFKP---LWEKVLQVVEH 280

Query: 348 GNLLQPSSTRYQTNFSSMITDVMANHSHLFSDKEKSFLDSFQLLPDDGQRLFVRIYTRKG 407
                P +TRYQ NF+ ++ +V+ + SHLF+  EK+FL+SF  L +D QRLF+R+YTRKG
Sbjct: 281 QMQFPPKTTRYQLNFNVLLQEVLRSCSHLFTADEKAFLESFPTLSEDSQRLFIRLYTRKG 340

Query: 408 PWFRMSSISYREISDLGQAAMELKLAGYIDMISCMDDLSNYDLKEVIDVLSVPEMKEILK 467
           PWFR+S+ISY E++D  QA  +L + G++  +   ++L N  +KE+ ++L+V E+++IL 
Sbjct: 341 PWFRLSNISYPEVTDSLQALKDLTVRGFMSSVKDANELDNQKMKEITELLNVTELRDILS 400

Query: 468 ELQKNNVSCTRRHELLSTLLYLYRNGTCTILPKRILKWTGTCIRTSDVADELLWRVQRLF 527
            + K     +R+ +L+++L   Y +GT   L   IL+ TG C + S  A+ L+WRV+RLF
Sbjct: 401 -MNKVFSRTSRKRDLINSLCSCYNDGTRINLATVILERTGLCAKVSSTAESLIWRVERLF 459

Query: 528 FLNGDQDLSFFLLVDLGLVRFPVYACTISHRVFQEISDLLQYEEAIQVAQVMDQSLDNSN 587
           FLNG+QDLS F+L+DLG++++P Y C  S ++F   + LL YEEAI+VAQ+MD+SLDN +
Sbjct: 460 FLNGEQDLSSFVLLDLGIIKYPTYKCIDSEQIFSNRTKLLAYEEAIEVAQLMDESLDNED 519

Query: 588 MEMVTRCIELSENRLSTAPKEENATRAEXXXXXXXXXXXXXVYSKILTLGVSVYERDRRY 647
            + V +CI ++E R+S++  +     A              V SK++ LGVS +E  +RY
Sbjct: 520 PQTVLKCIIIAETRISSSSLDSAHAAA------FNRFTAPWVNSKVVLLGVSFFENQKRY 573

Query: 648 TDAIRVLKRLLSTVASDRKRGYWALRLSVDLEHMNRSNESLSIAEAGVIDPWVRAGSKIA 707
             A+ +L+RLLS    D +RGYW +RLS DLEHM R NESL++AE G++DPWVRAGS++A
Sbjct: 574 NRAVYLLRRLLSCFNCDGRRGYWTVRLSTDLEHMGRPNESLTVAEQGLLDPWVRAGSRVA 633

Query: 708 LQRRVVRLSKPPRRWKVPSYANAVTTNIKEVNIEGRPLNCETGAKNVFYGYDGELCGVEQ 767
           LQRR++RL+KPPRRWK P+++N V   I EV I+GR LNCE G KN FYG DGE CGVEQ
Sbjct: 634 LQRRILRLAKPPRRWKTPTFSNLVDNKIPEVTIQGRSLNCEVGIKNRFYGEDGEQCGVEQ 693

Query: 768 LALQYYADEGGGWRGTHSEGGIWMTIFGLLMWDAIFSDVPDVFQTKFQTAPLDLETDEFY 827
           LALQYY+ EGGGW+G H+E  IW+TIFGLLMWD +FSDVP VFQT+FQTAPLDLET+ FY
Sbjct: 694 LALQYYSGEGGGWQGIHTESSIWLTIFGLLMWDILFSDVPGVFQTRFQTAPLDLETESFY 753

Query: 828 RSRKDLIESQLKKIQDGIAEEILISSWELHQGTSCRGVNWDRHSLTDLRAAVVCTXXXXX 887
            +RK+ IESQL+K+ +G+AEEILI S+E  +GT+CRGV W+R SL +LRAAV C      
Sbjct: 754 LTRKETIESQLEKVANGMAEEILIISYETQRGTACRGVAWERFSLEELRAAVACVGGMCI 813

Query: 888 XXXXXXXXXDYRSWSSGMPDLLLWRFLDERGGGEAKLVEVKGPRDQLSEQQRAWILVLMD 947
                    DYRSW SGMPDLL+WRF +    GEAKLVEVK  +D+LSEQQRAW+L+LMD
Sbjct: 814 ASLCRHLAQDYRSWCSGMPDLLVWRFKENGYEGEAKLVEVKSEKDRLSEQQRAWLLLLMD 873

Query: 948 FGFDVEVCKVSPVS 961
            GF+VE+CKV P S
Sbjct: 874 SGFNVEICKVRPAS 887



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,614,524
Number of extensions: 821635
Number of successful extensions: 1976
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 1
Length of query: 964
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 856
Effective length of database: 8,145,641
Effective search space: 6972668696
Effective search space used: 6972668696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)