BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0171800 Os06g0171800|AK120233
         (964 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0171800  Zinc finger, Rad18-type putative domain contai...  1779   0.0  

>Os06g0171800 Zinc finger, Rad18-type putative domain containing protein
          Length = 964

 Score = 1779 bits (4609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/964 (90%), Positives = 873/964 (90%)

Query: 1   MLTGRESLVRLIGXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MLTGRESLVRLIG                     Q                         
Sbjct: 1   MLTGRESLVRLIGRRRRSPLPAALALAVPPSRSLQDDAADAEREAAAGGSSSGGGDAAGA 60

Query: 61  XXWVACPVCGESIRGTDYCVNTHLDICLTRGTKRKLTQSTLLDFSFSRKATDDYALNNLN 120
             WVACPVCGESIRGTDYCVNTHLDICLTRGTKRKLTQSTLLDFSFSRKATDDYALNNLN
Sbjct: 61  AGWVACPVCGESIRGTDYCVNTHLDICLTRGTKRKLTQSTLLDFSFSRKATDDYALNNLN 120

Query: 121 TSDEAEHMEPTDGNVSSDGAFFSLNNDKVNSKGSANASSPGCLHGSPDISETCDTCLPPN 180
           TSDEAEHMEPTDGNVSSDGAFFSLNNDKVNSKGSANASSPGCLHGSPDISETCDTCLPPN
Sbjct: 121 TSDEAEHMEPTDGNVSSDGAFFSLNNDKVNSKGSANASSPGCLHGSPDISETCDTCLPPN 180

Query: 181 VLLPYTENTANNGVVKKCLSHMPSTDATSSTIGLLXXXXXXXXXXXXXXXXGRRFHENIE 240
           VLLPYTENTANNGVVKKCLSHMPSTDATSSTIGLL                GRRFHENIE
Sbjct: 181 VLLPYTENTANNGVVKKCLSHMPSTDATSSTIGLLSVTDSSNSVVVDTVIVGRRFHENIE 240

Query: 241 LQEGASITLLRDPQNAKDPDAIKVLYAGYECEQMLGYLPRELAKVLAPLLDRHYIECEGC 300
           LQEGASITLLRDPQNAKDPDAIKVLYAGYECEQMLGYLPRELAKVLAPLLDRHYIECEGC
Sbjct: 241 LQEGASITLLRDPQNAKDPDAIKVLYAGYECEQMLGYLPRELAKVLAPLLDRHYIECEGC 300

Query: 301 VVGVPEQQLDHVPIQLKCQKYTDENETYDDLKHPQFLWENFICAVGNGNLLQPSSTRYQT 360
           VVGVPEQQLDHVPIQLKCQKYTDENETYDDLKHPQFLWENFICAVGNGNLLQPSSTRYQT
Sbjct: 301 VVGVPEQQLDHVPIQLKCQKYTDENETYDDLKHPQFLWENFICAVGNGNLLQPSSTRYQT 360

Query: 361 NFSSMITDVMANHSHLFSDKEKSFLDSFQLLPDDGQRLFVRIYTRKGPWFRMSSISYREI 420
           NFSSMITDVMANHSHLFSDKEKSFLDSFQLLPDDGQRLFVRIYTRKGPWFRMSSISYREI
Sbjct: 361 NFSSMITDVMANHSHLFSDKEKSFLDSFQLLPDDGQRLFVRIYTRKGPWFRMSSISYREI 420

Query: 421 SDLGQAAMELKLAGYIDMISCMDDLSNYDLKEVIDVLSVPEMKEILKELQKNNVSCTRRH 480
           SDLGQAAMELKLAGYIDMISCMDDLSNYDLKEVIDVLSVPEMKEILKELQKNNVSCTRRH
Sbjct: 421 SDLGQAAMELKLAGYIDMISCMDDLSNYDLKEVIDVLSVPEMKEILKELQKNNVSCTRRH 480

Query: 481 ELLSTLLYLYRNGTCTILPKRILKWTGTCIRTSDVADELLWRVQRLFFLNGDQDLSFFLL 540
           ELLSTLLYLYRNGTCTILPKRILKWTGTCIRTSDVADELLWRVQRLFFLNGDQDLSFFLL
Sbjct: 481 ELLSTLLYLYRNGTCTILPKRILKWTGTCIRTSDVADELLWRVQRLFFLNGDQDLSFFLL 540

Query: 541 VDLGLVRFPVYACTISHRVFQEISDLLQYEEAIQVAQVMDQSLDNSNMEMVTRCIELSEN 600
           VDLGLVRFPVYACTISHRVFQEISDLLQYEEAIQVAQVMDQSLDNSNMEMVTRCIELSEN
Sbjct: 541 VDLGLVRFPVYACTISHRVFQEISDLLQYEEAIQVAQVMDQSLDNSNMEMVTRCIELSEN 600

Query: 601 RLSTAPKEENATRAEXXXXXXXXXXXXXVYSKILTLGVSVYERDRRYTDAIRVLKRLLST 660
           RLSTAPKEENATRAE             VYSKILTLGVSVYERDRRYTDAIRVLKRLLST
Sbjct: 601 RLSTAPKEENATRAEPPPSFFSRFSASSVYSKILTLGVSVYERDRRYTDAIRVLKRLLST 660

Query: 661 VASDRKRGYWALRLSVDLEHMNRSNESLSIAEAGVIDPWVRAGSKIALQRRVVRLSKPPR 720
           VASDRKRGYWALRLSVDLEHMNRSNESLSIAEAGVIDPWVRAGSKIALQRRVVRLSKPPR
Sbjct: 661 VASDRKRGYWALRLSVDLEHMNRSNESLSIAEAGVIDPWVRAGSKIALQRRVVRLSKPPR 720

Query: 721 RWKVPSYANAVTTNIKEVNIEGRPLNCETGAKNVFYGYDGELCGVEQLALQYYADEGGGW 780
           RWKVPSYANAVTTNIKEVNIEGRPLNCETGAKNVFYGYDGELCGVEQLALQYYADEGGGW
Sbjct: 721 RWKVPSYANAVTTNIKEVNIEGRPLNCETGAKNVFYGYDGELCGVEQLALQYYADEGGGW 780

Query: 781 RGTHSEGGIWMTIFGLLMWDAIFSDVPDVFQTKFQTAPLDLETDEFYRSRKDLIESQLKK 840
           RGTHSEGGIWMTIFGLLMWDAIFSDVPDVFQTKFQTAPLDLETDEFYRSRKDLIESQLKK
Sbjct: 781 RGTHSEGGIWMTIFGLLMWDAIFSDVPDVFQTKFQTAPLDLETDEFYRSRKDLIESQLKK 840

Query: 841 IQDGIAEEILISSWELHQGTSCRGVNWDRHSLTDLRAAVVCTXXXXXXXXXXXXXXDYRS 900
           IQDGIAEEILISSWELHQGTSCRGVNWDRHSLTDLRAAVVCT              DYRS
Sbjct: 841 IQDGIAEEILISSWELHQGTSCRGVNWDRHSLTDLRAAVVCTGGHRLASLLRHLALDYRS 900

Query: 901 WSSGMPDLLLWRFLDERGGGEAKLVEVKGPRDQLSEQQRAWILVLMDFGFDVEVCKVSPV 960
           WSSGMPDLLLWRFLDERGGGEAKLVEVKGPRDQLSEQQRAWILVLMDFGFDVEVCKVSPV
Sbjct: 901 WSSGMPDLLLWRFLDERGGGEAKLVEVKGPRDQLSEQQRAWILVLMDFGFDVEVCKVSPV 960

Query: 961 SKRR 964
           SKRR
Sbjct: 961 SKRR 964



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,162,403
Number of extensions: 1230190
Number of successful extensions: 2691
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 1
Length of query: 964
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 854
Effective length of database: 11,292,261
Effective search space: 9643590894
Effective search space used: 9643590894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)