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Os06g0164000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, MIZ-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.015) R2 : 0.319
β1 : 0.792 (0.055) R2dD : 0.322 R2D : 0.266
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.032) R2dN8 : 0.0534 R2N8 : -0.00256
σ : 0.282
deviance : 36.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.39 0.217 11.2 1.44 0.0493 -0.51 0.368 1.34 0.453 21.7 22.35 1500 -- --
26.27 0.239 11.2 1.21 0.000499 -0.663 0.329 -- 0.358 22.2 18.94 3514 -- --
21.77 0.217 11.2 1.42 0.0669 -0.507 -- 1.38 0.451 21.6 22.3 1227 -- --
25.77 0.236 11.2 1.23 0.0831 -0.85 -- -- 0.344 21 18.72 3805 -- --
22.03 0.219 11.2 1.42 -- -0.511 -- 1.34 0.452 -- 22.39 1470 -- --
35.62 0.28 11.3 0.807 0.0369 -- 0.403 -- 0.166 22.1 -- -- -- --
36.14 0.282 11.3 0.793 0.0614 -- -- -- 0.167 18.7 -- -- -- --
25.8 0.237 11.2 1.26 -- -0.94 -- -- 0.343 -- 18.42 3667 -- --
48.57 0.325 11.3 -- 0.105 -0.294 -- -- 0.163 20.5 22.46 899 -- --
36.34 0.282 11.3 0.792 -- -- -- -- 0.166 -- -- -- -- --
52.73 0.34 11.3 -- 0.0531 -- -- -- 0.0784 19.6 -- -- -- --
48.96 0.326 11.3 -- -- -0.274 -- -- 0.153 -- 22.3 920 -- --
52.89 0.339 11.3 -- -- -- -- -- 0.0776 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.27 temperature 10 720 > th dose dependent rect. 19 18
6 20.65 temperature 10 720 > th dose dependent rect. 19 16
10 20.71 temperature 30 720 < th dose dependent rect. 20 19
36 21.01 radiation 1 14400 < th dose independent rect. 18 12
57 21.13 temperature 30 720 < th dose dependent rect. 15 21
69 21.20 temperature 10 720 > th dose dependent sin 9 NA
94 21.28 temperature 30 720 < th dose dependent sin 9 NA
132 21.40 radiation 1 14400 > th dose independent rect. 18 11
139 21.42 radiation 1 14400 > th dose independent rect. 18 1
164 21.48 temperature 30 1440 < th dose dependent rect. 17 5
171 21.50 temperature 30 1440 < th dose dependent rect. 15 14
177 21.51 temperature 15 1440 > th dose dependent rect. 15 14
180 21.52 temperature 15 1440 > th dose dependent rect. 17 7
190 21.54 radiation 1 14400 < th dose independent rect. 18 8
195 21.55 radiation 1 14400 < th dose independent rect. 18 2
198 21.55 radiation 1 14400 < th dose independent rect. 18 6
202 21.55 temperature 30 1440 < th dose dependent rect. 16 10
233 21.57 temperature 15 1440 > th dose dependent rect. 16 11
256 21.59 temperature 15 1440 > th dose dependent sin 14 NA
258 21.59 temperature 30 1440 < th dose dependent sin 15 NA
275 21.60 temperature 15 720 > th dose dependent rect. 12 23
342 21.66 temperature 10 720 > th dose dependent rect. 8 23
351 21.67 temperature 15 720 > th dose dependent rect. 23 23
375 21.69 temperature 10 720 > th dose dependent rect. 1 23
376 21.69 temperature 10 720 > th dose dependent rect. 10 23
396 21.72 temperature 15 720 > th dose dependent no NA NA
424 21.74 wind 9 43200 > th dose dependent rect. 18 10
434 21.75 temperature 10 1440 > th dose dependent rect. 20 1
438 21.75 wind 9 43200 > th dose dependent rect. 18 6
517 21.81 temperature 30 1440 < th dose dependent rect. 20 1
609 21.87 humidity 90 14400 > th dose dependent rect. 21 5
669 21.91 temperature 30 720 < th dose dependent no NA NA