BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0164000 Os06g0164000|AK069464
(872 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41580.1 | chr5:16626563-16630659 REVERSE LENGTH=761 369 e-102
AT1G08910.1 | chr1:2856227-2860816 FORWARD LENGTH=830 252 6e-67
AT5G60410.2 | chr5:24295226-24300792 FORWARD LENGTH=886 63 6e-10
>AT5G41580.1 | chr5:16626563-16630659 REVERSE LENGTH=761
Length = 760
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/436 (41%), Positives = 268/436 (61%), Gaps = 7/436 (1%)
Query: 31 AVAMNARRLVMIGDRLRTHFRGGGGTVLEPPDLAHLVYAFARGIDFALSSGDVPTVASEI 90
A +N+ RL + RLR H + G ++P + +FA+GIDFA+++ D+P E
Sbjct: 21 ASLVNSFRLASVTQRLRYHIQDGAK--VDPKEFQICCISFAKGIDFAIANNDIPKKVEEF 78
Query: 91 PSILKKVYLVGKDQFLQSSVMVLMISCKNACSEKWFQPTDCTEILRMANELSGKFCTPVS 150
P +LK++ G D + ++++MVLMIS K+AC WF ++ E++ +A+E+ F + S
Sbjct: 79 PWLLKQLCRHGTDVYTKTALMVLMISVKHACHLGWFSDSESQELIALADEIRTCFGSSGS 138
Query: 151 QPDNDSTVIQIISTIMPRYYPQLKFERLVTSLEAKVGYDVLMADFFIHKNVPR--EEKIN 208
+ S IM R+YP +K ++ S E K GY +L DF+I KN+P +EKI
Sbjct: 139 TSPGIKSPGSTFSQIMERFYPFVKLGHVLVSFEVKAGYTMLAHDFYISKNMPHSLQEKIR 198
Query: 209 LIVVQKEDLNASSCIANPPHVSFLVNGKGVDKRTNVSMETGPQFPTDITRMLKYGANIIQ 268
L V Q ++++ S+CI+NPP VSFL+NGKGV+KR N++M+TGPQ PT++T LKYG N++Q
Sbjct: 199 LFVAQTDNIDTSACISNPPEVSFLLNGKGVEKRVNIAMDTGPQLPTNVTAQLKYGTNLLQ 258
Query: 269 AIGYFNANYIIAVAFLNKLESFDAPNLNDYAQP-VAADPPDSDLLEGPSRVSLKCPISFR 327
+G F NYII +AF + + P L DY Q V PDSD++EGPSRVSL CPIS +
Sbjct: 259 VMGNFKGNYIIIIAFTGLVVPPEKPVLKDYLQSGVIEASPDSDIIEGPSRVSLSCPISRK 318
Query: 328 RIKTPIKGRLCKHYQCFDYDNYMELNLRKPTWRCPFCNTPSNFTDLRIDQKMVKILQETG 387
RIK P+KG+LCKH QCFD+ NY+ +N+R PTWRCP CN P + D+R+DQ M KIL++
Sbjct: 319 RIKLPVKGQLCKHLQCFDFSNYVHINMRNPTWRCPHCNQPVCYPDIRLDQNMAKILKDVE 378
Query: 388 EDTIDVLVFADGSWKAISTNDERSDRHSSDVIQQSRXXXXXXXXXXXVIDLINEDNDGDV 447
+ DV++ A G+WK ++ N + ++I V DL +D D ++
Sbjct: 379 HNAADVIIDAGGTWK-VTKNTGETPEPVREIIHDLEDPMSLLNSGPVVFDLTGDD-DAEL 436
Query: 448 PMSFTSASEDVKPFLN 463
+ + ED KP ++
Sbjct: 437 EVFGDNKVEDRKPCMS 452
>AT1G08910.1 | chr1:2856227-2860816 FORWARD LENGTH=830
Length = 829
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 22/345 (6%)
Query: 69 AFARGIDFALSSGDVPTVASEIPSILKKVYLVGKDQF-LQSSVMVLMISCKNACSEKWFQ 127
+ A ID A+ +VP E+ IL V D + ++ VM LMIS K+AC WF
Sbjct: 26 SLANEIDAAIGRNEVPGNIQELALILNNVCRRKCDDYQTRAVVMALMISVKSACQLGWFP 85
Query: 128 PTDCTEILRMANELSGKFCTPVSQPDNDSTVIQIISTIMPRYYPQLKFERLVTSLEAKVG 187
+ E+L + + + F P + ++ + +IS ++ R+YP +K ++ S EAK
Sbjct: 86 ERETQELLAIIDLMWNGFSCPENVTSCVNSPVTLISQVIERFYPCVKLGHILVSFEAKPE 145
Query: 188 YDVLMADFFIHKNVPR--EEKINLIVVQKEDLNASSCIANPPHVSFLVNGKGVDKRTNVS 245
++M DF I K +P ++K+ L VV+ ED++ S+CI +P VSFL+NGKG+DKR N+S
Sbjct: 146 SKMMMKDFHISKKMPHSPKQKVGLFVVRTEDISRSNCIVHPQGVSFLLNGKGIDKRVNIS 205
Query: 246 METGPQFPTDITRMLKYGANIIQAIGYFNANYIIAVAFLNKLESFDAPNLNDYAQP-VAA 304
ME+GPQ PT++T +L GAN++QAIG F +Y+IA+AF++ + + P L DY P V
Sbjct: 206 MESGPQLPTNVTALLNLGANLLQAIGCFGGSYLIAIAFMDVIPLPNKPLLKDYVHPEVVG 265
Query: 305 DPPDSDLLEGPSRVSLKCPISFRRIKTPIKGRLCKHYQCFDYDNYMELNLRKPTWRCPFC 364
D D++EGPSR+SL CPIS RIK P+KG +CKH QCFD+ NY+ +N R+
Sbjct: 266 SNSDCDIIEGPSRISLSCPISRTRIKLPVKGHVCKHLQCFDFWNYVNMNTRR-------- 317
Query: 365 NTPSNFTDLRIDQKMVKILQETGEDTIDVLVFADGSWKAISTNDE 409
+ RI IL+E G + DV++ ADG+W + NDE
Sbjct: 318 ----HHGAARI------ILEEVGRNAADVVISADGTWMVETENDE 352
>AT5G60410.2 | chr5:24295226-24300792 FORWARD LENGTH=886
Length = 885
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 318 VSLKCPISFRRIKTPIKGRL--CKHYQCFDYDNYMELNLRKPTWRCPFCNTPSNFTDLRI 375
V+L+CP+S RIK + GR C H CFD D ++ELN R W+CP C + + +
Sbjct: 359 VNLRCPMSGSRIK--VAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIV 416
Query: 376 D---QKMVKILQETGEDTIDVLVFADGSWK 402
D ++ ++ E+ ++ V DGSW+
Sbjct: 417 DPYFNRITSKMKHCDEEVTEIEVKPDGSWR 446
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,788,927
Number of extensions: 739662
Number of successful extensions: 1930
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1925
Number of HSP's successfully gapped: 3
Length of query: 872
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 765
Effective length of database: 8,173,057
Effective search space: 6252388605
Effective search space used: 6252388605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)