BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0164000 Os06g0164000|AK069464
         (872 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0164000  Zinc finger, MIZ-type domain containing protein    1612   0.0  
Os03g0719100  DNA-binding SAP domain containing protein            69   1e-11

>Os06g0164000 Zinc finger, MIZ-type domain containing protein
          Length = 872

 Score = 1612 bits (4174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/843 (93%), Positives = 789/843 (93%)

Query: 30  MAVAMNARRLVMIGDRLRTHFRGGGGTVLEPPDLAHLVYAFARGIDFALSSGDVPTVASE 89
           MAVAMNARRLVMIGDRLRTHFRGGGGTVLEPPDLAHLVYAFARGIDFALSSGDVPTVASE
Sbjct: 30  MAVAMNARRLVMIGDRLRTHFRGGGGTVLEPPDLAHLVYAFARGIDFALSSGDVPTVASE 89

Query: 90  IPSILKKVYLVGKDQFLQSSVMVLMISCKNACSEKWFQPTDCTEILRMANELSGKFCTPV 149
           IPSILKKVYLVGKDQFLQSSVMVLMISCKNACSEKWFQPTDCTEILRMANELSGKFCTPV
Sbjct: 90  IPSILKKVYLVGKDQFLQSSVMVLMISCKNACSEKWFQPTDCTEILRMANELSGKFCTPV 149

Query: 150 SQPDNDSTVIQIISTIMPRYYPQLKFERLVTSLEAKVGYDVLMADFFIHKNVPREEKINL 209
           SQPDNDSTVIQIISTIMPRYYPQLKFERLVTSLEAKVGYDVLMADFFIHKNVPREEKINL
Sbjct: 150 SQPDNDSTVIQIISTIMPRYYPQLKFERLVTSLEAKVGYDVLMADFFIHKNVPREEKINL 209

Query: 210 IVVQKEDLNASSCIANPPHVSFLVNGKGVDKRTNVSMETGPQFPTDITRMLKYGANIIQA 269
           IVVQKEDLNASSCIANPPHVSFLVNGKGVDKRTNVSMETGPQFPTDITRMLKYGANIIQA
Sbjct: 210 IVVQKEDLNASSCIANPPHVSFLVNGKGVDKRTNVSMETGPQFPTDITRMLKYGANIIQA 269

Query: 270 IGYFNANYIIAVAFLNKLESFDAPNLNDYAQPVAADPPDSDLLEGPSRVSLKCPISFRRI 329
           IGYFNANYIIAVAFLNKLESFDAPNLNDYAQPVAADPPDSDLLEGPSRVSLKCPISFRRI
Sbjct: 270 IGYFNANYIIAVAFLNKLESFDAPNLNDYAQPVAADPPDSDLLEGPSRVSLKCPISFRRI 329

Query: 330 KTPIKGRLCKHYQCFDYDNYMELNLRKPTWRCPFCNTPSNFTDLRIDQKMVKILQETGED 389
           KTPIKGRLCKHYQCFDYDNYMELNLRKPTWRCPFCNTPSNFTDLRIDQKMVKILQETGED
Sbjct: 330 KTPIKGRLCKHYQCFDYDNYMELNLRKPTWRCPFCNTPSNFTDLRIDQKMVKILQETGED 389

Query: 390 TIDVLVFADGSWKAISTNDERSDRHSSDVIQQSRXXXXXXXXXXXVIDLINEDNDGDVPM 449
           TIDVLVFADGSWKAISTNDERSDRHSSDVIQQSR           VIDLINEDNDGDVPM
Sbjct: 390 TIDVLVFADGSWKAISTNDERSDRHSSDVIQQSRDTMDTDATADDVIDLINEDNDGDVPM 449

Query: 450 SFTSASEDVKPFLNCQDLSVADYLSDLPMNTVSQAEDLYAGGASRGNNERGNATSTSGQN 509
           SFTSASEDVKPFLNCQDLSVADYLSDLPMNTVSQAEDLYAGGASRGNNERGNATSTSGQN
Sbjct: 450 SFTSASEDVKPFLNCQDLSVADYLSDLPMNTVSQAEDLYAGGASRGNNERGNATSTSGQN 509

Query: 510 XXXXXXXXXXXXXXXXXXXILPHNILHPVITDAVSPSLDTSNSVVLRQHVAQGTRSDIVP 569
                              ILPHNILHPVITDAVSPSLDTSNSVVLRQHVAQGTRSDIVP
Sbjct: 510 SSLPSTGGLGSSSFGTLESILPHNILHPVITDAVSPSLDTSNSVVLRQHVAQGTRSDIVP 569

Query: 570 SQPRIDPQLRLEIARPPIPRNVAREPTGIQALPVQPQRVRPNIYNCXXXXXXXXXXXXYQ 629
           SQPRIDPQLRLEIARPPIPRNVAREPTGIQALPVQPQRVRPNIYNC            YQ
Sbjct: 570 SQPRIDPQLRLEIARPPIPRNVAREPTGIQALPVQPQRVRPNIYNCPPPFPQSSPASAYQ 629

Query: 630 VHQVTNADSVITAMSTGIGSLSRAPDAAPLLQHQSTQQEIRATQNYHQGQFIGLTAPQNF 689
           VHQVTNADSVITAMSTGIGSLSRAPDAAPLLQHQSTQQEIRATQNYHQGQFIGLTAPQNF
Sbjct: 630 VHQVTNADSVITAMSTGIGSLSRAPDAAPLLQHQSTQQEIRATQNYHQGQFIGLTAPQNF 689

Query: 690 MGTRPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQP 749
           MGTRPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQP
Sbjct: 690 MGTRPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQP 749

Query: 750 GGTSAVNPQIRGHLFPAQQRSQAMRPQAVPRPTISQAPPRAQSPFLXXXXXXXXXXXXIG 809
           GGTSAVNPQIRGHLFPAQQRSQAMRPQAVPRPTISQAPPRAQSPFL            IG
Sbjct: 750 GGTSAVNPQIRGHLFPAQQRSQAMRPQAVPRPTISQAPPRAQSPFLPATARPPSTPPPIG 809

Query: 810 TSDDLQELPVDESWRPTGQMRGSLTGEAYSVAIGRYNPSVNIAGQQTSHVTSQARPAGPD 869
           TSDDLQELPVDESWRPTGQMRGSLTGEAYSVAIGRYNPSVNIAGQQTSHVTSQARPAGPD
Sbjct: 810 TSDDLQELPVDESWRPTGQMRGSLTGEAYSVAIGRYNPSVNIAGQQTSHVTSQARPAGPD 869

Query: 870 ARR 872
           ARR
Sbjct: 870 ARR 872



>Os03g0719100 DNA-binding SAP domain containing protein
          Length = 813

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 304 ADPPDSD----LLEGPSRVSLKCPISFRRIKTPIKGRLCKHYQCFDYDNYMELNLRKPTW 359
           AD  DSD    ++     V+L+CP++  RIK   + + C H  CFD + ++ELN R   W
Sbjct: 352 ADNADSDSDIEVVADSVSVNLRCPMTGSRIKIAGRFKPCVHMGCFDLEAFVELNQRSRKW 411

Query: 360 RCPFCNTPSNFTDLRID---QKMVKILQETGEDTIDVLVFADGSWK 402
           +CP C    +  ++ ID    ++  ++Q  G+D  ++ V  DGSW+
Sbjct: 412 QCPICLKNYSLDNIIIDPYFNRITALVQSCGDDVSEIDVKPDGSWR 457



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,374,274
Number of extensions: 1255264
Number of successful extensions: 4390
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4388
Number of HSP's successfully gapped: 2
Length of query: 872
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 762
Effective length of database: 11,292,261
Effective search space: 8604702882
Effective search space used: 8604702882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)