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Os06g0141100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NUDIX hydrolase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.015) R2 : 2.63e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00346 (0.0316) R2dN8 : 3.4e-05 R2N8 : 2.63e-05
σ : 0.282
deviance : 36.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.26 0.217 11.6 -0.411 0.105 -0.378 0.381 -0.565 0.0164 19 29.9 1342 -- --
21.38 0.215 11.7 -0.47 0.0928 -0.445 0.374 -- -0.00218 18.8 29.7 1320 -- --
21.61 0.216 11.6 -0.41 0.109 -0.375 -- -0.592 0.0161 18.1 29.9 1342 -- --
21.55 0.216 11.7 -0.542 0.11 -0.451 -- -- -0.00993 17.8 29.72 1304 -- --
22.24 0.22 11.6 -0.41 -- -0.371 -- -0.586 0.018 -- 29.9 1342 -- --
31.42 0.263 11.7 -0.384 0.0985 -- 0.374 -- -0.0465 20.8 -- -- -- --
31.88 0.264 11.7 -0.396 0.099 -- -- -- -0.0464 20.4 -- -- -- --
22.17 0.219 11.7 -0.541 -- -0.444 -- -- -0.0123 -- 29.8 1304 -- --
28.78 0.25 11.6 -- 0.125 -0.373 -- -- 0.0834 17.8 30.34 1265 -- --
32.43 0.266 11.7 -0.396 -- -- -- -- -0.0474 -- -- -- -- --
36.01 0.281 11.7 -- 0.101 -- -- -- -0.00231 20.1 -- -- -- --
29.09 0.251 11.6 -- -- -0.423 -- -- 0.0834 -- 30.53 993 -- --
36.57 0.282 11.7 -- -- -- -- -- -0.00346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.29 humidity 60.0 1440 > th dose dependent rect. 18 1
3 20.32 humidity 90.0 1440 < th dose dependent rect. 18 1
7 20.52 precipitation 0.1 4320 > th dose dependent rect. 14 12
9 20.53 precipitation 0.1 4320 > th dose dependent rect. 14 10
15 20.59 precipitation 0.1 4320 > th dose dependent rect. 17 9
18 20.63 precipitation 0.1 14400 > th dose independent rect. 17 6
19 20.63 precipitation 0.1 14400 < th dose independent rect. 17 6
20 20.63 precipitation 0.1 14400 < th dose dependent rect. 17 6
25 20.69 precipitation 0.1 4320 > th dose dependent rect. 20 22
30 20.73 precipitation 0.1 4320 > th dose dependent rect. 8 19
34 20.75 wind 9.0 43200 > th dose dependent sin 15 NA
37 20.78 precipitation 0.1 4320 < th dose independent rect. 13 5
38 20.78 precipitation 0.1 4320 < th dose dependent rect. 13 5
39 20.79 precipitation 0.1 4320 > th dose dependent rect. 9 15
46 20.80 precipitation 0.1 4320 > th dose independent rect. 13 5
51 20.81 precipitation 0.1 4320 > th dose dependent rect. 6 21
54 20.82 precipitation 0.1 4320 > th dose dependent sin 20 NA
66 20.84 humidity 70.0 1440 > th dose independent rect. 16 16
74 20.86 humidity 70.0 1440 > th dose independent rect. 16 3
75 20.86 precipitation 0.1 4320 > th dose independent rect. 8 10
81 20.87 precipitation 0.1 4320 > th dose dependent rect. 6 18
93 20.90 humidity 70.0 1440 > th dose independent rect. 16 8
97 20.91 humidity 70.0 1440 > th dose independent rect. 16 5
102 20.91 precipitation 0.1 4320 < th dose independent rect. 8 10
108 20.91 precipitation 0.1 4320 < th dose dependent rect. 8 10
110 20.91 wind 7.0 43200 > th dose dependent rect. 13 18
137 21.01 wind 9.0 43200 > th dose independent sin 14 NA
140 21.01 precipitation 0.1 4320 > th dose dependent rect. 13 6
147 21.03 humidity 70.0 1440 < th dose independent rect. 16 17
155 21.04 precipitation 0.1 4320 > th dose dependent rect. 8 11
159 21.06 humidity 70.0 1440 < th dose independent rect. 16 3
161 21.06 precipitation 0.1 4320 > th dose dependent rect. 10 9
165 21.07 wind 7.0 43200 > th dose independent rect. 24 21
170 21.08 wind 7.0 43200 > th dose independent rect. 2 19
175 21.08 precipitation 0.1 4320 > th dose dependent rect. 6 13
183 21.10 precipitation 0.1 4320 < th dose independent rect. 15 7
190 21.10 precipitation 0.1 4320 < th dose dependent rect. 15 7
194 21.11 wind 9.0 43200 < th dose independent sin 14 NA
195 21.11 wind 7.0 43200 < th dose independent rect. 24 21
199 21.12 wind 7.0 43200 < th dose independent rect. 2 19
204 21.13 precipitation 0.1 4320 > th dose independent rect. 15 7
209 21.13 wind 7.0 43200 > th dose independent rect. 11 22
235 21.15 wind 7.0 43200 > th dose independent rect. 17 23
255 21.17 wind 7.0 43200 < th dose independent rect. 11 22
260 21.17 precipitation 0.1 43200 > th dose dependent rect. 17 4
282 21.19 wind 7.0 43200 < th dose independent rect. 13 23
288 21.20 wind 7.0 43200 > th dose independent rect. 6 16
297 21.20 wind 9.0 43200 > th dose dependent rect. 14 11
300 21.21 wind 7.0 43200 > th dose independent no NA NA
312 21.21 wind 7.0 43200 < th dose independent rect. 17 23
330 21.22 wind 7.0 43200 > th dose independent rect. 6 23
340 21.23 humidity 70.0 1440 > th dose independent sin 12 NA
345 21.23 temperature 30.0 1440 < th dose independent rect. 14 22
348 21.23 wind 7.0 43200 > th dose dependent rect. 10 11
394 21.26 wind 7.0 43200 < th dose independent no NA NA
408 21.26 temperature 30.0 1440 > th dose independent rect. 14 22
412 21.26 wind 7.0 43200 > th dose dependent rect. 17 4
418 21.26 wind 9.0 43200 > th dose dependent rect. 17 13
446 21.28 wind 7.0 43200 < th dose independent rect. 6 23
452 21.28 wind 7.0 43200 > th dose dependent rect. 10 15
492 21.31 wind 9.0 43200 > th dose independent rect. 17 13
505 21.31 wind 7.0 43200 < th dose independent rect. 20 23
509 21.32 precipitation 0.1 4320 > th dose independent sin 20 NA
510 21.32 precipitation 0.1 4320 < th dose independent sin 20 NA
513 21.32 precipitation 0.1 4320 > th dose independent rect. 14 12
514 21.32 precipitation 0.1 4320 < th dose independent rect. 14 12
524 21.32 precipitation 0.1 4320 < th dose dependent sin 20 NA
527 21.32 precipitation 0.1 4320 < th dose dependent rect. 14 12
562 21.34 wind 7.0 43200 > th dose independent rect. 10 15
573 21.34 wind 7.0 43200 > th dose dependent rect. 14 8
580 21.35 wind 9.0 43200 < th dose independent rect. 17 4
608 21.35 wind 5.0 43200 > th dose dependent rect. 24 21
637 21.36 wind 7.0 43200 > th dose dependent rect. 3 18
642 21.36 wind 7.0 43200 > th dose dependent rect. 17 23
644 21.37 temperature 30.0 1440 < th dose independent sin 1 NA
648 21.37 temperature 30.0 1440 < th dose independent rect. 8 10
651 21.37 temperature 30.0 1440 < th dose independent rect. 2 15
659 21.37 temperature 30.0 1440 < th dose independent rect. 2 22
660 21.37 temperature 30.0 1440 < th dose independent rect. 19 22
675 21.38 temperature 30.0 1440 < th dose independent no NA NA
677 21.38 temperature 30.0 1440 < th dose independent rect. 8 8
680 21.38 temperature 30.0 1440 < th dose independent rect. 6 10
686 21.38 temperature 30.0 1440 < th dose independent rect. 4 12
734 21.38 temperature 30.0 1440 < th dose independent rect. 22 18
844 21.40 temperature 30.0 1440 < th dose independent rect. 15 2
845 21.40 wind 9.0 43200 > th dose independent rect. 17 4
888 21.41 precipitation 0.1 43200 > th dose dependent rect. 20 1
943 21.44 precipitation 0.1 14400 > th dose independent rect. 19 3
951 21.44 precipitation 0.1 43200 > th dose dependent rect. 16 2
960 21.45 temperature 30.0 1440 > th dose independent sin 1 NA
963 21.45 temperature 30.0 1440 > th dose independent no NA NA
967 21.45 temperature 30.0 1440 > th dose independent rect. 8 11