BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0141100 Os06g0141100|Os06g0141100
         (405 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0141100  NUDIX hydrolase domain containing protein           645   0.0  

>Os06g0141100 NUDIX hydrolase domain containing protein
          Length = 405

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/405 (80%), Positives = 327/405 (80%)

Query: 1   MSIHLRAHAFAASPLRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIL 60
           MSIHLRAHAFAASPLRGL                                       KIL
Sbjct: 1   MSIHLRAHAFAASPLRGLSASTAAVSPSAAADALRSLLDAGAGAADAAHPHPHPHLSKIL 60

Query: 61  PFRRGRPLARSYDSXXXXXXXXXXXXXXXXXXXXXXXXXXVPDVPSDAFVFLXXXXXXXX 120
           PFRRGRPLARSYDS                          VPDVPSDAFVFL        
Sbjct: 61  PFRRGRPLARSYDSPPPPAAAAAAPPPPPAWRLAWLPPARVPDVPSDAFVFLGAHGEEEG 120

Query: 121 XXXXXYWAVDVSERDGEGAGDGSAFVDLRTLMVATDWRDKDAMGDLAIAGHARALLEWHS 180
                YWAVDVSERDGEGAGDGSAFVDLRTLMVATDWRDKDAMGDLAIAGHARALLEWHS
Sbjct: 121 KEAAAYWAVDVSERDGEGAGDGSAFVDLRTLMVATDWRDKDAMGDLAIAGHARALLEWHS 180

Query: 181 TAKFCGACGSRAVPAEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDKENDRALLSRQSRF 240
           TAKFCGACGSRAVPAEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDKENDRALLSRQSRF
Sbjct: 181 TAKFCGACGSRAVPAEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDKENDRALLSRQSRF 240

Query: 241 VPRMWSCLAGFIEPGESLEEAVRRETWEETGIQVGEVIYHSSQPWPVGPSTMPCQLMVGF 300
           VPRMWSCLAGFIEPGESLEEAVRRETWEETGIQVGEVIYHSSQPWPVGPSTMPCQLMVGF
Sbjct: 241 VPRMWSCLAGFIEPGESLEEAVRRETWEETGIQVGEVIYHSSQPWPVGPSTMPCQLMVGF 300

Query: 301 FAYAKSLEIHVDKKELEDAQWHSREDVKKALTFAEYEKAQRTNALKVNQICKGVEKRQSI 360
           FAYAKSLEIHVDKKELEDAQWHSREDVKKALTFAEYEKAQRTNALKVNQICKGVEKRQSI
Sbjct: 301 FAYAKSLEIHVDKKELEDAQWHSREDVKKALTFAEYEKAQRTNALKVNQICKGVEKRQSI 360

Query: 361 SADLKIESEEPAPMFVPGPYAIAHHLISSWAFEGAPKAPSSFSNL 405
           SADLKIESEEPAPMFVPGPYAIAHHLISSWAFEGAPKAPSSFSNL
Sbjct: 361 SADLKIESEEPAPMFVPGPYAIAHHLISSWAFEGAPKAPSSFSNL 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,785,331
Number of extensions: 462915
Number of successful extensions: 1111
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1110
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)