BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0141100 Os06g0141100|Os06g0141100
         (405 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20070.1  | chr5:6779893-6782308 FORWARD LENGTH=439            445   e-125

>AT5G20070.1 | chr5:6779893-6782308 FORWARD LENGTH=439
          Length = 438

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/393 (57%), Positives = 271/393 (68%), Gaps = 14/393 (3%)

Query: 1   MSIHLRAHAFAASPLRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIL 60
           MS++L+ HAFA +PL+                                         K+L
Sbjct: 36  MSMNLKTHAFAGNPLKS-----KTPKSTDPFSPTSAFESLKTLIPVIPNHSTPSPDFKVL 90

Query: 61  PFRRGRPLARSYDSXXXXXXXXXXXXXXXXXXXXXXXXXXVPDVPSDAFVFLXXXXXXXX 120
           PF +GRPL  S                             V D+  D+ V+L        
Sbjct: 91  PFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGV-DLNEDSLVYLGPKLEEDL 149

Query: 121 XXXXXYWAVDVSERDG---EGAGDGSAFVDLRTLMVATDWRDKDAMGDLAIAGHARALLE 177
                YWAVD++E DG   E  G    FV+LRTLMVA DW D+ AM +LAIAG+ARALLE
Sbjct: 150 V----YWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARALLE 204

Query: 178 WHSTAKFCGACGSRAVPAEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDKENDRALLSRQ 237
           WH+ ++FCG+CGS+  P EAGRRKQCS+E+C+KR+YPRVDPVVIMLVID+ENDRALLSRQ
Sbjct: 205 WHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALLSRQ 264

Query: 238 SRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIQVGEVIYHSSQPWPVGPSTMPCQLM 297
           SR+VPRMWSCLAGFIEPGESLEEAVRRETWEETGI+VG+V+YHSSQPWPVGPS+MPCQLM
Sbjct: 265 SRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPCQLM 324

Query: 298 VGFFAYAKSLEIHVDKKELEDAQWHSREDVKKALTFAEYEKAQRTNALKVNQICKGVEKR 357
           +GFFA+AK+L+I+VDK+ELEDAQWHSRE+VKKAL  AEY KAQRT A KV QICKGVE+ 
Sbjct: 325 LGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGVERS 384

Query: 358 QSISADLKIESEEPAPMFVPGPYAIAHHLISSW 390
           QS+S D  +ES E APMF+PGP+AIAHHLIS+W
Sbjct: 385 QSLSTDFNLESGELAPMFIPGPFAIAHHLISAW 417



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,168,806
Number of extensions: 272033
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,337,553
Effective search space: 2534616112
Effective search space used: 2534616112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)