Os06g0139800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.
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Os06g0139800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.68 | 0.417 | 8.55 | -0.564 | 1.11 | 0.392 | -0.0342 | 2.93 | -0.556 | 8.31 | 0.3505 | 4509 | -- | -- |
| 79.41 | 0.415 | 8.53 | -0.713 | 1.08 | 0.606 | -0.0181 | -- | -0.634 | 8.39 | 1 | 6880 | -- | -- |
| 78.68 | 0.413 | 8.55 | -0.565 | 1.11 | 0.392 | -- | 2.93 | -0.556 | 8.31 | 0.3464 | 4508 | -- | -- |
| 79.33 | 0.415 | 8.53 | -0.705 | 1.11 | 0.586 | -- | -- | -0.623 | 8.41 | 0.9986 | 6873 | -- | -- |
| 146.51 | 0.564 | 8.58 | -0.578 | -- | 0.234 | -- | 2.65 | -0.538 | -- | 0.8754 | 4763 | -- | -- |
| 88.95 | 0.442 | 8.51 | -0.793 | 1.11 | -- | -0.0636 | -- | -0.523 | 8.36 | -- | -- | -- | -- |
| 88.96 | 0.442 | 8.51 | -0.795 | 1.11 | -- | -- | -- | -0.523 | 8.36 | -- | -- | -- | -- |
| 147.32 | 0.565 | 8.56 | -0.718 | -- | 0.583 | -- | -- | -0.618 | -- | 1.01 | 6491 | -- | -- |
| 91.69 | 0.446 | 8.52 | -- | 1.11 | 0.691 | -- | -- | -0.562 | 8.45 | 1.5 | 6797 | -- | -- |
| 157.01 | 0.585 | 8.54 | -0.789 | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
| 105.63 | 0.481 | 8.49 | -- | 1.1 | -- | -- | -- | -0.434 | 8.41 | -- | -- | -- | -- |
| 153.7 | 0.577 | 8.55 | -- | -- | 1.15 | -- | -- | -0.579 | -- | 0.5 | 2000 | -- | -- |
| 173.42 | 0.615 | 8.52 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 3 | 74.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 4 | 74.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 8 | 74.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 14 | 74.89 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 13 |
| 17 | 75.08 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 18 | 75.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 19 | 75.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 32 | 75.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 34 | 75.43 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 13 |
| 37 | 75.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 40 | 75.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 72 | 75.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 73 | 75.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 75 | 75.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 105 | 76.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 106 | 76.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 118 | 76.20 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 131 | 76.29 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 138 | 76.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 146 | 76.40 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 154 | 76.45 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 5 | NA |
| 156 | 76.47 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 209 | 76.71 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 4 | NA |
| 210 | 76.71 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 4 | NA |
| 214 | 76.71 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 225 | 76.76 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 228 | 76.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 252 | 76.87 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 257 | 76.88 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 261 | 76.88 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 267 | 76.92 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 281 | 76.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 287 | 77.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 289 | 77.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 290 | 77.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 308 | 77.06 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 313 | 77.06 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 317 | 77.07 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 320 | 77.08 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 339 | 77.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 353 | 77.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 355 | 77.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 7 |
| 360 | 77.18 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 382 | 77.27 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 387 | 77.28 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 413 | 77.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 416 | 77.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 456 | 77.45 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 460 | 77.47 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 465 | 77.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 475 | 77.49 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 547 | 77.67 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 556 | 77.68 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 595 | 77.78 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 596 | 77.78 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 665 | 77.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 682 | 77.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 693 | 77.99 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 22 |
| 694 | 77.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 22 |
| 698 | 77.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 699 | 77.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 22 |
| 723 | 78.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 724 | 78.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 732 | 78.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 736 | 78.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 745 | 78.08 | humidity | 80.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 748 | 78.08 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 751 | 78.09 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 842 | 78.22 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 855 | 78.24 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 877 | 78.26 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 928 | 78.32 | humidity | 80.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 948 | 78.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 954 | 78.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 973 | 78.37 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 17 |