Os06g0133900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) (Fragment).
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Os06g0133900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.28 | 0.371 | 11 | 0.683 | 0.393 | 0.638 | 0.276 | -0.263 | 0.289 | 3.21 | -0.0001958 | 88 | -- | -- |
| 61.63 | 0.368 | 11 | 0.673 | 0.353 | 0.666 | 0.485 | -- | 0.322 | 2.68 | -3.261 | 71 | -- | -- |
| 61.66 | 0.369 | 11 | 0.678 | 0.337 | 0.623 | -- | -0.582 | 0.32 | 3.11 | -2.807e-05 | 87 | -- | -- |
| 62.41 | 0.37 | 11 | 0.661 | 0.343 | 0.631 | -- | -- | 0.319 | 3.06 | -2.807e-05 | 87 | -- | -- |
| 65.86 | 0.38 | 11 | 0.698 | -- | 0.571 | -- | -0.278 | 0.334 | -- | 36.15 | 56 | -- | -- |
| 67.69 | 0.386 | 11 | 0.682 | 0.251 | -- | -0.275 | -- | 0.317 | 7.98 | -- | -- | -- | -- |
| 67.88 | 0.386 | 11 | 0.674 | 0.254 | -- | -- | -- | 0.317 | 7.59 | -- | -- | -- | -- |
| 65.94 | 0.38 | 11 | 0.695 | -- | 0.596 | -- | -- | 0.333 | -- | 37.15 | 55 | -- | -- |
| 73.92 | 0.403 | 11 | -- | 0.366 | 0.656 | -- | -- | 0.245 | 2.97 | -2.807e-05 | 87 | -- | -- |
| 71.35 | 0.395 | 11 | 0.677 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 79.84 | 0.418 | 11 | -- | 0.26 | -- | -- | -- | 0.242 | 7.41 | -- | -- | -- | -- |
| 78.61 | 0.414 | 11 | -- | -- | 0.448 | -- | -- | 0.25 | -- | 20 | 59 | -- | -- |
| 83.45 | 0.426 | 11 | -- | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 8 | 59.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 9 | 60.02 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 12 | 60.18 | wind | 9 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 50 | 60.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 52 | 60.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 54 | 60.78 | wind | 9 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 80 | 61.12 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 1 |
| 86 | 61.16 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 19 |
| 89 | 61.21 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 7 |
| 91 | 61.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 94 | 61.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 95 | 61.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 103 | 61.27 | radiation | 40 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 105 | 61.28 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 7 |
| 120 | 61.38 | humidity | 90 | 90 | < th | dose dependent | rect. | 6 | 10 |
| 125 | 61.39 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 128 | 61.40 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 16 |
| 146 | 61.45 | humidity | 80 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 159 | 61.49 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 7 |
| 185 | 61.57 | humidity | 80 | 270 | < th | dose independent | sin | 2 | NA |
| 223 | 61.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 225 | 61.68 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 227 | 61.69 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 5 |
| 275 | 61.76 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 20 |
| 297 | 61.79 | humidity | 60 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 304 | 61.81 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 321 | 61.84 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 21 |
| 333 | 61.86 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 346 | 61.88 | humidity | 60 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 373 | 61.91 | humidity | 80 | 90 | < th | dose dependent | sin | 3 | NA |
| 374 | 61.91 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 378 | 61.91 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 497 | 62.03 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 498 | 62.04 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 12 |
| 515 | 62.05 | temperature | 25 | 270 | < th | dose independent | sin | 11 | NA |
| 516 | 62.05 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 527 | 62.06 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 15 |
| 529 | 62.06 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 541 | 62.08 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 576 | 62.12 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 580 | 62.13 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 14 |
| 584 | 62.13 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 624 | 62.16 | radiation | 40 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 628 | 62.17 | wind | 9 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 634 | 62.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 636 | 62.18 | radiation | 40 | 10 | < th | dose independent | rect. | 7 | 13 |
| 639 | 62.18 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 654 | 62.18 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 662 | 62.20 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 1 |
| 667 | 62.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 16 |
| 678 | 62.22 | humidity | 60 | 90 | > th | dose dependent | sin | 0 | NA |
| 683 | 62.23 | humidity | 80 | 270 | > th | dose independent | sin | 2 | NA |
| 692 | 62.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 695 | 62.24 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 696 | 62.24 | humidity | 70 | 30 | < th | dose independent | rect. | 11 | 5 |
| 719 | 62.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 733 | 62.27 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 766 | 62.29 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 7 |
| 809 | 62.30 | radiation | 10 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 815 | 62.30 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 820 | 62.31 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 839 | 62.32 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 927 | 62.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 933 | 62.34 | radiation | 1 | 10 | > th | dose dependent | sin | 22 | NA |
| 980 | 62.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |