BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0133900 Os06g0133900|AF413082
(515 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0133900 Similar to 5-enolpyruvylshikimate-3-phosphate ... 809 0.0
>Os06g0133900 Similar to 5-enolpyruvylshikimate-3-phosphate synthase (EC
2.5.1.19) (Fragment)
Length = 515
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/438 (91%), Positives = 401/438 (91%)
Query: 78 LQPIREISGAVQLPGSKSLSNRILLLSALSEGTTVVDNLLNSEDVHYMLEALKALGLSVE 137
LQPIREISGAVQLPGSKSLSNRILLLSALSEGTTVVDNLLNSEDVHYMLEALKALGLSVE
Sbjct: 78 LQPIREISGAVQLPGSKSLSNRILLLSALSEGTTVVDNLLNSEDVHYMLEALKALGLSVE 137
Query: 138 ADKVAKRAVVVGCGGKFPVEKDAKEEVQLFLGNAGTAMRPLXXXXXXXXXXXXYVLDGVP 197
ADKVAKRAVVVGCGGKFPVEKDAKEEVQLFLGNAGTAMRPL YVLDGVP
Sbjct: 138 ADKVAKRAVVVGCGGKFPVEKDAKEEVQLFLGNAGTAMRPLTAAVTAAGGNATYVLDGVP 197
Query: 198 RMRERPIGDLVVGLKQLGADVDCFLGTECPPVRVKGIGGLPGGKVKLSGSISSQYXXXXX 257
RMRERPIGDLVVGLKQLGADVDCFLGTECPPVRVKGIGGLPGGKVKLSGSISSQY
Sbjct: 198 RMRERPIGDLVVGLKQLGADVDCFLGTECPPVRVKGIGGLPGGKVKLSGSISSQYLSALL 257
Query: 258 XXXXXXXGDVEIEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSPGN 317
GDVEIEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSPGN
Sbjct: 258 MAAPLALGDVEIEIIDKLISIPYVEMTLRLMERFGVKAEHSDSWDRFYIKGGQKYKSPGN 317
Query: 318 AYVEGDASSASYFLAGAAIXXXXXXXXXXXXXSLQGDVKFAEVLEMMGAKVTWTDTSVTV 377
AYVEGDASSASYFLAGAAI SLQGDVKFAEVLEMMGAKVTWTDTSVTV
Sbjct: 318 AYVEGDASSASYFLAGAAITGGTVTVQGCGTTSLQGDVKFAEVLEMMGAKVTWTDTSVTV 377
Query: 378 TGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMVAI 437
TGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMVAI
Sbjct: 378 TGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMVAI 437
Query: 438 RTELTKLGASVEEGPDYCIITPPEKLNITAIDTYDDHRMAMAFSLAACADVPVTIRDPGC 497
RTELTKLGASVEEGPDYCIITPPEKLNITAIDTYDDHRMAMAFSLAACADVPVTIRDPGC
Sbjct: 438 RTELTKLGASVEEGPDYCIITPPEKLNITAIDTYDDHRMAMAFSLAACADVPVTIRDPGC 497
Query: 498 TRKTFPNYFDVLSTFVRN 515
TRKTFPNYFDVLSTFVRN
Sbjct: 498 TRKTFPNYFDVLSTFVRN 515
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,733,802
Number of extensions: 501225
Number of successful extensions: 948
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 410
Effective length of database: 11,553,331
Effective search space: 4736865710
Effective search space used: 4736865710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)