Os06g0129300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os06g0129300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.41 | 0.334 | 7.5 | 1.09 | 0.758 | 1.38 | -0.812 | 0.143 | 0.695 | 6.65 | 29.95 | 10 | -- | -- |
| 50.24 | 0.33 | 7.5 | 1.12 | 0.769 | 1.39 | -0.793 | -- | 0.7 | 6.68 | 30 | 3 | -- | -- |
| 51.93 | 0.338 | 7.5 | 1.07 | 0.769 | 1.33 | -- | 0.0719 | 0.69 | 6.51 | 29.86 | 7 | -- | -- |
| 51.84 | 0.335 | 7.5 | 1.09 | 0.768 | 1.34 | -- | -- | 0.693 | 6.52 | 30 | 3 | -- | -- |
| 73.33 | 0.399 | 7.51 | 1.15 | -- | 1.76 | -- | 0.326 | 0.762 | -- | 30.17 | 206 | -- | -- |
| 75.99 | 0.409 | 7.56 | 0.769 | 1.04 | -- | -0.227 | -- | 0.433 | 5 | -- | -- | -- | -- |
| 76.12 | 0.409 | 7.56 | 0.77 | 1.04 | -- | -- | -- | 0.434 | 4.97 | -- | -- | -- | -- |
| 73.23 | 0.399 | 7.5 | 1.23 | -- | 1.8 | -- | -- | 0.794 | -- | 30.15 | 203 | -- | -- |
| 79.85 | 0.418 | 7.55 | -- | 0.858 | 0.888 | -- | -- | 0.496 | 5.83 | 30 | 3 | -- | -- |
| 133.26 | 0.539 | 7.57 | 0.808 | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
| 91.73 | 0.448 | 7.58 | -- | 1.06 | -- | -- | -- | 0.348 | 4.94 | -- | -- | -- | -- |
| 110.05 | 0.489 | 7.55 | -- | -- | 1.61 | -- | -- | 0.547 | -- | 36.64 | 155 | -- | -- |
| 150.48 | 0.573 | 7.59 | -- | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.30 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 48.24 | temperature | 25.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 6 | 48.58 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 19 | 49.46 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 21 | 49.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 33 | 50.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 34 | 50.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 39 | 50.44 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 49 | 50.60 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 51 | 50.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 53 | 50.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 51.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 51.46 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 77 | 51.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 88 | 51.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 105 | 52.19 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 111 | 52.28 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 124 | 52.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 144 | 52.79 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 157 | 52.91 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 173 | 53.12 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 238 | 53.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 255 | 53.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 349 | 54.51 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 364 | 54.61 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 517 | 55.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 528 | 55.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 662 | 56.14 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 764 | 56.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 788 | 56.59 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 915 | 56.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 959 | 57.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 961 | 57.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 962 | 57.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 967 | 57.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 973 | 57.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 19 |