BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0129300 Os06g0129300|AK072613
         (302 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0129300  Armadillo-like helical domain containing protein    495   e-140
Os10g0520900                                                      221   6e-58

>Os06g0129300 Armadillo-like helical domain containing protein
          Length = 302

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/302 (83%), Positives = 251/302 (83%)

Query: 1   MSRKEVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRLYREVTLALRTGLRDA 60
           MSRKEVVV                                 RRRLYREVTLALRTGLRDA
Sbjct: 1   MSRKEVVVAAAGGGAGAESGAEGSSSAGSSGGGGELAEALARRRLYREVTLALRTGLRDA 60

Query: 61  KADXXXXXXXXXXXXXXXXXXTASATDDSQLLLFRHSQSIPDLQVIPVLFQNSLHQPKED 120
           KAD                  TASATDDSQLLLFRHSQSIPDLQVIPVLFQNSLHQPKED
Sbjct: 61  KADFSFLRARGLRSLLGFLRSTASATDDSQLLLFRHSQSIPDLQVIPVLFQNSLHQPKED 120

Query: 121 PVVTLDHIFGVEPMKITSPPTDNEIALALRVLEGCCLLYSRCTALAHKYKAVKVILNILA 180
           PVVTLDHIFGVEPMKITSPPTDNEIALALRVLEGCCLLYSRCTALAHKYKAVKVILNILA
Sbjct: 121 PVVTLDHIFGVEPMKITSPPTDNEIALALRVLEGCCLLYSRCTALAHKYKAVKVILNILA 180

Query: 181 NRGPAEQGVCLDALISLMLDSPPNQMDFEEFSGLEKVAELLKDVQVEEHIRLKCGEFLLL 240
           NRGPAEQGVCLDALISLMLDSPPNQMDFEEFSGLEKVAELLKDVQVEEHIRLKCGEFLLL
Sbjct: 181 NRGPAEQGVCLDALISLMLDSPPNQMDFEEFSGLEKVAELLKDVQVEEHIRLKCGEFLLL 240

Query: 241 LIGHVYAKENSPIHEQMRILFGEQCASLIWAASRFGSTLDVEQRQMALQIQARRVVESLE 300
           LIGHVYAKENSPIHEQMRILFGEQCASLIWAASRFGSTLDVEQRQMALQIQARRVVESLE
Sbjct: 241 LIGHVYAKENSPIHEQMRILFGEQCASLIWAASRFGSTLDVEQRQMALQIQARRVVESLE 300

Query: 301 PY 302
           PY
Sbjct: 301 PY 302



>Os10g0520900 
          Length = 300

 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 121/264 (45%), Positives = 168/264 (63%), Gaps = 7/264 (2%)

Query: 42  RRRLYREVTLALRTGLRDAKADXXXXXXXXXXXXXXXXXXTASATDDSQLLLFRHSQSIP 101
           RRR+YR++  +LR GLRDA A                    A+A   +   LFRHSQ++ 
Sbjct: 24  RRRMYRDLAQSLRCGLRDASAGFSFLRLRGLRALLRALRSAAAAD--ADARLFRHSQALR 81

Query: 102 DLQVIPVLFQNSLHQPKEDPVVTLDHIFGVEP-MKITSPPTDNEIALALRVLEGCCLLYS 160
           DLQV+PVLF++SL + + D VVT+  + G+ P +K+++P TD+E+ALALRVLEGCCLL  
Sbjct: 82  DLQVVPVLFEHSLRRAQGDAVVTVGQVLGISPAVKLSNPATDSEVALALRVLEGCCLLCR 141

Query: 161 RCTALAHKYKAVKVILNILANRGPAEQGVCLDALISLMLDSPPNQMDFEEFSGLEKVAEL 220
            C A AH+Y AVKV+LNIL  RG  EQ  CLD L++LM+DS  N MDF+E  GL+K+ +L
Sbjct: 142 DCAAAAHRYDAVKVLLNILMTRGTLEQKACLDTLLALMVDSSENLMDFKEHEGLDKIGDL 201

Query: 221 LKDVQVEEHIRLKCGEFLLLLIGHVYAKEN----SPIHEQMRILFGEQCASLIWAASRFG 276
           +KD Q ++++RLKC EFLLL       K +    S + E ++ + GE CAS I +   F 
Sbjct: 202 VKDTQRDDNVRLKCAEFLLLFSRSASEKGDATFVSCMQEDLKNIVGENCASFICSKIFFS 261

Query: 277 STLDVEQRQMALQIQARRVVESLE 300
           STLD E  +  L I A+ V++ L+
Sbjct: 262 STLDSEVTEPELNIHAKHVLDLLD 285



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,745,265
Number of extensions: 277476
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)