BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0129300 Os06g0129300|AK072613
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27750.1  | chr4:13841708-13843501 FORWARD LENGTH=306          299   1e-81

>AT4G27750.1 | chr4:13841708-13843501 FORWARD LENGTH=306
          Length = 305

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/263 (57%), Positives = 196/263 (74%), Gaps = 5/263 (1%)

Query: 43  RRLYREVTLALRTGLRDAKADXXXXXXXXXXXXXXXXXXTASATDDSQLLLFRHSQSIPD 102
           +RLYRE+TL+LRTGLRDA A+                   A +  DS + LF H+Q+I D
Sbjct: 45  QRLYRELTLSLRTGLRDACAEFSFLRIRGLRSLLKTLRTVADS--DSIIRLFSHTQTISD 102

Query: 103 LQVIPVLFQNSLHQPKEDPVVTLDHIFGVEPMKITSPPTDNEIALALRVLEGCCLLYSRC 162
           LQ++PVLFQ+SL + ++D V +LDHIF VEPMKITSP TD E+A+ALRVLEGCCLL+ + 
Sbjct: 103 LQLVPVLFQHSLKEAEDDKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQS 162

Query: 163 TALAHKYKAVKVILNILANRGPAEQGVCLDALISLMLDSPPNQMDFEEFSGLEKVAELLK 222
           T LAHK+ AV+V++N+L+ RG  EQG CLDALIS++LDS  NQ+DF   +G+E+VA L++
Sbjct: 163 TVLAHKHGAVRVMMNVLSTRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMR 222

Query: 223 DVQVEEHIRLKCGEFLLLLIGHVYAKENSPI---HEQMRILFGEQCASLIWAASRFGSTL 279
           D Q +E++RL+CGEFLLLL+GHV  K+ SPI   +E +R L GE+ ASLIWAAS+FGST 
Sbjct: 223 DKQADENLRLRCGEFLLLLVGHVNGKDRSPIASVNEDIRRLLGEKSASLIWAASQFGSTG 282

Query: 280 DVEQRQMALQIQARRVVESLEPY 302
           D EQR  AL IQA RV+ESL+ Y
Sbjct: 283 DPEQRITALHIQAGRVLESLDLY 305



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,990,164
Number of extensions: 183782
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)