Os06g0115800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0115800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.14 | 0.164 | 14.4 | -0.228 | 0.763 | 0.434 | 0.459 | 1.99 | 0.213 | 7.15 | 1.042 | 1473 | -- | -- |
| 13.71 | 0.172 | 14.4 | -0.0247 | 0.673 | 0.19 | 0.395 | -- | 0.262 | 7.07 | 25.33 | 2178 | -- | -- |
| 12.53 | 0.165 | 14.4 | -0.223 | 0.733 | 0.46 | -- | 2.01 | 0.21 | 6.77 | 0.5602 | 1401 | -- | -- |
| 13.56 | 0.172 | 14.4 | -0.0424 | 0.722 | 0.193 | -- | -- | 0.277 | 7.11 | 13.08 | 12225 | -- | -- |
| 16.47 | 0.189 | 14.4 | -0.0437 | -- | 1.17 | -- | 1.7 | 0.286 | -- | 1.568 | 2288 | -- | -- |
| 14.19 | 0.177 | 14.4 | -0.0355 | 0.749 | -- | 0.368 | -- | 0.236 | 7.03 | -- | -- | -- | -- |
| 14.54 | 0.179 | 14.4 | -0.0284 | 0.75 | -- | -- | -- | 0.236 | 7.04 | -- | -- | -- | -- |
| 18.45 | 0.2 | 14.4 | 0.0639 | -- | 1.15 | -- | -- | 0.345 | -- | 3.086 | 2282 | -- | -- |
| 13.57 | 0.172 | 14.4 | -- | 0.717 | 0.196 | -- | -- | 0.288 | 7.06 | 14.61 | 12237 | -- | -- |
| 44.17 | 0.311 | 14.4 | -0.0135 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 14.56 | 0.179 | 14.4 | -- | 0.75 | -- | -- | -- | 0.239 | 7.04 | -- | -- | -- | -- |
| 18.55 | 0.201 | 14.4 | -- | -- | 1.13 | -- | -- | 0.352 | -- | 3.143 | 2284 | -- | -- |
| 44.17 | 0.31 | 14.4 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.84 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 19 |
| 2 | 11.86 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 5 | 11.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 6 | 11.96 | radiation | 40 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 11.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 27 | 11.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 31 | 12.01 | radiation | 40 | 720 | > th | dose dependent | sin | 12 | NA |
| 32 | 12.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 34 | 12.04 | humidity | 90 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 40 | 12.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 41 | 12.07 | humidity | 90 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 42 | 12.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 44 | 12.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 45 | 12.08 | radiation | 1 | 1440 | < th | dose dependent | sin | 2 | NA |
| 47 | 12.08 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 49 | 12.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 50 | 12.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 51 | 12.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 111 | 12.12 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 114 | 12.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 117 | 12.12 | temperature | 10 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 215 | 12.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 217 | 12.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 346 | 12.18 | radiation | 1 | 1440 | > th | dose independent | sin | 2 | NA |
| 348 | 12.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 398 | 12.19 | radiation | 1 | 1440 | < th | dose independent | sin | 3 | NA |
| 399 | 12.19 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 2 |
| 407 | 12.19 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 446 | 12.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 451 | 12.20 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 7 |
| 504 | 12.21 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 548 | 12.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 561 | 12.22 | temperature | 10 | 14400 | > th | dose dependent | sin | 2 | NA |
| 565 | 12.22 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 626 | 12.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 659 | 12.23 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 669 | 12.23 | temperature | 30 | 14400 | < th | dose dependent | sin | 2 | NA |
| 686 | 12.23 | humidity | 80 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 750 | 12.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 900 | 12.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 904 | 12.26 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 985 | 12.27 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 997 | 12.27 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 998 | 12.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 11 |