BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0115800 Os06g0115800|AK062240
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45410.1 | chr5:18402071-18403282 REVERSE LENGTH=343 234 3e-62
AT4G25030.1 | chr4:12865336-12866638 FORWARD LENGTH=345 227 6e-60
>AT5G45410.1 | chr5:18402071-18403282 REVERSE LENGTH=343
Length = 342
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 146/228 (64%), Gaps = 11/228 (4%)
Query: 4 ESVDAKPEPALPFNPLAARAATISLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
+S D AL FNPLA + ATISLSA
Sbjct: 75 DSEDEAGRRALQFNPLAGKVATISLSAFGPGGPFGFGPFSEKWKKQQKKPKPS------- 127
Query: 64 XXXXMKQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKCPP 123
Q+ G+SS HEA+ +EWL+ G CP+A+S+RA S ++PL++KAL P G+K +CP
Sbjct: 128 ----KNQQSGDSSKHEAVGDEWLKTGNCPIAKSFRAASKVMPLISKALTLPPGMKYRCPA 183
Query: 124 XXXXXXXXXXXTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAAVH 183
T LVKSLRPQPLP KM+AIAL+GMAAN+PLGVWREHTKKFSP WF AVH
Sbjct: 184 PIVAARAALSKTALVKSLRPQPLPEKMLAIALMGMAANVPLGVWREHTKKFSPAWFLAVH 243
Query: 184 AAVPFIGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAK 231
AAVPFI MLRKSV MPKTAMA TI ASI+GQ IGSRAER RLKA+A K
Sbjct: 244 AAVPFIAMLRKSVLMPKTAMALTIGASILGQVIGSRAERYRLKAVAEK 291
>AT4G25030.1 | chr4:12865336-12866638 FORWARD LENGTH=345
Length = 344
Score = 227 bits (578), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/264 (49%), Positives = 157/264 (59%), Gaps = 30/264 (11%)
Query: 9 KPEPALPFNPLAARAATISLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM 68
KP P F+PLAA+AATISLS+
Sbjct: 83 KPVPV--FHPLAAKAATISLSSFGSGGPFGFDAFSDMFKNQKKKSDS------------S 128
Query: 69 KQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKCPPXXXXX 128
K KGGN HEAM +EWL+ G CP+A+SYRA+SG+ PLVAK LQPP G+K KCP
Sbjct: 129 KNKGGN---HEAMGDEWLKTGNCPIAKSYRAVSGVAPLVAKILQPPPGMKFKCPQAIVTA 185
Query: 129 XXXXXXTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAAVHAAVPF 188
T K+LRPQPLPAK++ I +LGMA N+PLGVWREHT+KFS WF A+HAAVPF
Sbjct: 186 RAAISKTPFAKNLRPQPLPAKVLVIGMLGMALNVPLGVWREHTEKFSASWFIALHAAVPF 245
Query: 189 IGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAKS-----------DADST 237
IG+LRKSV MPKTAM FTIAAS++GQ IGSRAER RLK++A K +AD
Sbjct: 246 IGILRKSVLMPKTAMVFTIAASVLGQVIGSRAERRRLKSVAEKKLTLEVPNPSSVEADQM 305
Query: 238 TVADMYPNKTGNCSDTEGKAWDPL 261
A + + G C D W+P+
Sbjct: 306 QFAGV--SSDGRCGDKVVMKWNPM 327
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,586,290
Number of extensions: 147442
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)