BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0115800 Os06g0115800|AK062240
         (283 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0115800  Conserved hypothetical protein                      426   e-120
Os07g0159500  Conserved hypothetical protein                      410   e-115
Os10g0580900  Conserved hypothetical protein                      253   1e-67

>Os06g0115800 Conserved hypothetical protein
          Length = 283

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/283 (77%), Positives = 220/283 (77%)

Query: 1   NNSESVDAKPEPALPFNPLAARAATISLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           NNSESVDAKPEPALPFNPLAARAATISLSA                              
Sbjct: 1   NNSESVDAKPEPALPFNPLAARAATISLSAFGPFGFNFFNGKGKRQNKKLNNLNQSNKKP 60

Query: 61  XXXXXXXMKQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLK 120
                  MKQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLK
Sbjct: 61  SNPNQNSMKQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLK 120

Query: 121 CPPXXXXXXXXXXXTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFA 180
           CPP           TELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFA
Sbjct: 121 CPPAVVAVRAALARTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFA 180

Query: 181 AVHAAVPFIGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAKSDADSTTVA 240
           AVHAAVPFIGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAKSDADSTTVA
Sbjct: 181 AVHAAVPFIGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAKSDADSTTVA 240

Query: 241 DMYPNKTGNCSDTEGKAWDPLXXXXXXXXXXXXXXXPTPSMCF 283
           DMYPNKTGNCSDTEGKAWDPL               PTPSMCF
Sbjct: 241 DMYPNKTGNCSDTEGKAWDPLAMKMMAGRASGGAAAPTPSMCF 283



>Os07g0159500 Conserved hypothetical protein
          Length = 370

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/282 (75%), Positives = 216/282 (76%), Gaps = 1/282 (0%)

Query: 2   NSESVDAKPEPALPFNPLAARAATISLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
           NSES+DA PEPAL FNPLAARAATISLSA                               
Sbjct: 90  NSESIDANPEPALLFNPLAARAATISLSAFGPFGFNFFNGKGKRQNKKPNNLNQSNKKPS 149

Query: 62  XXXXXXMKQKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKC 121
                 MKQKGGNSSSHEAMSNEW+ENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKC
Sbjct: 150 NPNQNSMKQKGGNSSSHEAMSNEWMENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKC 209

Query: 122 PPXXXXXXXXXXXTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAA 181
           PP           TELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAA
Sbjct: 210 PPAVVAIRAALARTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAA 269

Query: 182 VHAAVPFIGMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLKALAAKSDADSTTVAD 241
           VHAAVPFIGMLRKSVNMPKTAMAFTIAASI+GQTIGSRAERIRLKALAAK DADSTTVAD
Sbjct: 270 VHAAVPFIGMLRKSVNMPKTAMAFTIAASIIGQTIGSRAERIRLKALAAKGDADSTTVAD 329

Query: 242 MYPNKTGNCSDTEGKAWDPLXXXXXXXXXXXXXXXPTPSMCF 283
           MYPNK+GNCSDTEGKAWDPL               PTPSMCF
Sbjct: 330 MYPNKSGNCSDTEGKAWDPL-AMKMAGRASGGVAAPTPSMCF 370



>Os10g0580900 Conserved hypothetical protein
          Length = 352

 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/255 (56%), Positives = 170/255 (66%), Gaps = 18/255 (7%)

Query: 10  PEPALPFNPLAARAATISLSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMK 69
           P+P   FNPLAA+AATISLSA                                     + 
Sbjct: 93  PKPNPEFNPLAAKAATISLSAFGGFFSFGDFSNKRNKKNSNQKKPNN-----------LP 141

Query: 70  QKGGNSSSHEAMSNEWLENGQCPLARSYRAMSGILPLVAKALQPPAGVKLKCPPXXXXXX 129
           Q GG  ++HEA+SNEWLE GQCPLA+SYRA+SG++PLVAK + PPAG+KL+CPP      
Sbjct: 142 QNGGQPNNHEALSNEWLEMGQCPLAKSYRALSGVVPLVAKMMTPPAGMKLRCPPAVVAAR 201

Query: 130 XXXXXTELVKSLRPQPLPAKMVAIALLGMAANIPLGVWREHTKKFSPQWFAAVHAAVPFI 189
                T   K LRPQPLP K++ +ALLGMAAN+PLG+WREHT+KFS QWFAAVHAAVPFI
Sbjct: 202 AALSRTAFAKGLRPQPLPTKILVMALLGMAANVPLGIWREHTEKFSVQWFAAVHAAVPFI 261

Query: 190 GMLRKSVNMPKTAMAFTIAASIVGQTIGSRAERIRLK---ALAAKSDADSTTVADMYPNK 246
           GMLRKSV MPKTAMA TIAASI+GQTIGSRAERIRLK    +AA S  D++T   +   K
Sbjct: 262 GMLRKSVLMPKTAMALTIAASILGQTIGSRAERIRLKRAAKVAAGSQGDASTRMSL---K 318

Query: 247 TGNCSDTEGKAWDPL 261
           TG  +D + + WDPL
Sbjct: 319 TGRYTD-DVQFWDPL 332



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,624,169
Number of extensions: 255489
Number of successful extensions: 682
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 3
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)