Os06g0102300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochelatin synthase.
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Os06g0102300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochelatin synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.65 | 0.219 | 10.8 | -0.323 | 0.211 | 0.328 | -0.587 | -0.286 | 0.11 | 19.9 | 29.42 | 280 | -- | -- |
| 21.7 | 0.217 | 10.8 | -0.339 | 0.207 | 0.321 | -0.588 | -- | 0.106 | 19.8 | 29.4 | 281 | -- | -- |
| 22.56 | 0.221 | 10.8 | -0.35 | 0.22 | 0.318 | -- | 0.0932 | 0.101 | 20.3 | 29.5 | 300 | -- | -- |
| 22.56 | 0.221 | 10.8 | -0.339 | 0.217 | 0.317 | -- | -- | 0.102 | 20.4 | 29.5 | 301 | -- | -- |
| 24.65 | 0.231 | 10.8 | -0.3 | -- | 0.27 | -- | -0.317 | 0.109 | -- | 29.5 | 201 | -- | -- |
| 24.51 | 0.232 | 10.8 | -0.405 | 0.152 | -- | -0.522 | -- | 0.0911 | 21.2 | -- | -- | -- | -- |
| 25.09 | 0.235 | 10.8 | -0.39 | 0.169 | -- | -- | -- | 0.0894 | 23.2 | -- | -- | -- | -- |
| 24.65 | 0.231 | 10.8 | -0.352 | -- | 0.23 | -- | -- | 0.0991 | -- | 29.33 | 196 | -- | -- |
| 25.49 | 0.235 | 10.8 | -- | 0.23 | 0.384 | -- | -- | 0.124 | 20.3 | 29.65 | 300 | -- | -- |
| 26.87 | 0.242 | 10.8 | -0.385 | -- | -- | -- | -- | 0.091 | -- | -- | -- | -- | -- |
| 29.09 | 0.252 | 10.8 | -- | 0.165 | -- | -- | -- | 0.133 | 23.1 | -- | -- | -- | -- |
| 27.86 | 0.246 | 10.8 | -- | -- | 0.249 | -- | -- | 0.144 | -- | 29.19 | 193 | -- | -- |
| 30.79 | 0.259 | 10.8 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 2 | 21.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 4 | 21.73 | temperature | 30.0 | 270 | < th | dose independent | sin | 22 | NA |
| 7 | 21.75 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 10 | 21.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 14 | 21.81 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 29 | 21.86 | temperature | 30.0 | 720 | < th | dose independent | sin | 7 | NA |
| 30 | 21.86 | temperature | 30.0 | 270 | < th | dose independent | sin | 1 | NA |
| 31 | 21.86 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 8 |
| 61 | 21.88 | temperature | 30.0 | 270 | > th | dose independent | sin | 23 | NA |
| 67 | 21.89 | temperature | 30.0 | 720 | > th | dose independent | sin | 5 | NA |
| 69 | 21.89 | wind | 5.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 70 | 21.89 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 74 | 21.89 | temperature | 30.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 75 | 21.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 80 | 21.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 95 | 21.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 99 | 21.91 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 100 | 21.91 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 21 |
| 102 | 21.92 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 103 | 21.92 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 104 | 21.92 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 137 | 21.94 | wind | 5.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 144 | 21.95 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 145 | 21.95 | wind | 7.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 146 | 21.95 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 149 | 21.95 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 281 | 21.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 282 | 21.97 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 283 | 21.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 303 | 21.98 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 16 |
| 324 | 21.99 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 342 | 22.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 12 |
| 351 | 22.00 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 362 | 22.01 | temperature | 30.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 366 | 22.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 10 |
| 367 | 22.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 370 | 22.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 16 |
| 371 | 22.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 381 | 22.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 386 | 22.02 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 391 | 22.03 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 412 | 22.04 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 414 | 22.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 7 |
| 429 | 22.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 436 | 22.05 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 458 | 22.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 466 | 22.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 490 | 22.07 | temperature | 30.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 503 | 22.07 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 518 | 22.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 22 |
| 688 | 22.12 | wind | 7.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 689 | 22.12 | wind | 7.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 698 | 22.12 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 699 | 22.12 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 713 | 22.13 | temperature | 30.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 794 | 22.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 18 |
| 796 | 22.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 20 |
| 798 | 22.15 | wind | 5.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 820 | 22.15 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 839 | 22.16 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 886 | 22.17 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 911 | 22.18 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 955 | 22.18 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 957 | 22.19 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 970 | 22.19 | temperature | 30.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 983 | 22.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 996 | 22.19 | temperature | 25.0 | 90 | > th | dose dependent | sin | 20 | NA |
| 1000 | 22.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |