BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0102300 Os06g0102300|AK071754
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0102300 Similar to Phytochelatin synthase 516 e-147
Os05g0415200 Similar to Phytochelatin synthase 377 e-105
>Os06g0102300 Similar to Phytochelatin synthase
Length = 260
Score = 516 bits (1330), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/260 (95%), Positives = 248/260 (95%)
Query: 1 MAAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCGXX 60
MAAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCG
Sbjct: 1 MAAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCGLA 60
Query: 61 XXXXXXXXXXIDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVR 120
IDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVR
Sbjct: 61 SLSVVLNALAIDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVR 120
Query: 121 SFRADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALIL 180
SFRADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALIL
Sbjct: 121 SFRADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALIL 180
Query: 181 DVARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVLLCRVAEMKA 240
DVARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVLLCRVAEMKA
Sbjct: 181 DVARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVLLCRVAEMKA 240
Query: 241 GKAWRSIAWKMYPIFLRMRV 260
GKAWRSIAWKMYPIFLRMRV
Sbjct: 241 GKAWRSIAWKMYPIFLRMRV 260
>Os05g0415200 Similar to Phytochelatin synthase
Length = 246
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/230 (76%), Positives = 197/230 (85%)
Query: 2 AAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCGXXX 61
AA+ SLY R LPSPPAVEFAS EG+RLF+EAL+ GT+QGFF+L+SVFQTQSEPAFCG
Sbjct: 16 AAVPSLYGRALPSPPAVEFASAEGRRLFAEALQGGTMQGFFSLVSVFQTQSEPAFCGLAT 75
Query: 62 XXXXXXXXXIDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVRS 121
IDPGR+WKGPWRWFDESMLDCCE LD V+AEGITF K+ACLAHC+GA+VR+
Sbjct: 76 LAVVLNALRIDPGRRWKGPWRWFDESMLDCCEHLDTVRAEGITFGKVACLAHCSGADVRT 135
Query: 122 FRADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALILD 181
FRA Q+T+ D R HL+R ASSQDCHL+ASYHRK QTGTGHFSPIGGYHAGQDMALILD
Sbjct: 136 FRAAQATLADLRRHLLRCASSQDCHLVASYHRKLLGQTGTGHFSPIGGYHAGQDMALILD 195
Query: 182 VARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVL 231
VARFKYPPHW+PLPLLWEAMNT D+ATGLLRGFMLISR+T AP L+ V+
Sbjct: 196 VARFKYPPHWIPLPLLWEAMNTIDEATGLLRGFMLISRNTEAPLLIRAVV 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,050,729
Number of extensions: 354106
Number of successful extensions: 1111
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)