BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0102300 Os06g0102300|AK071754
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44070.1 | chr5:17734876-17737672 FORWARD LENGTH=486 344 3e-95
AT1G03980.1 | chr1:1019311-1021871 REVERSE LENGTH=453 333 4e-92
>AT5G44070.1 | chr5:17734876-17737672 FORWARD LENGTH=486
Length = 485
Score = 344 bits (882), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 160/246 (65%), Positives = 191/246 (77%), Gaps = 7/246 (2%)
Query: 3 AMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCGXXXX 62
AMASLYRR LPSPPA++F+S EGK +F+EAL+ GT++GFF LIS FQTQSEPA+CG
Sbjct: 2 AMASLYRRSLPSPPAIDFSSAEGKLIFNEALQKGTMEGFFRLISYFQTQSEPAYCGLASL 61
Query: 63 XXXXXXXXIDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVRSF 122
IDPGR+WKGPWRWFDESMLDCCEPL+ VK +GI+F K+ CLAHC+GA V +F
Sbjct: 62 SVVLNALSIDPGRKWKGPWRWFDESMLDCCEPLEVVKEKGISFGKVVCLAHCSGAKVEAF 121
Query: 123 RADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALILDV 182
R QSTI DFR +V+ SS++CH+I++YHR FKQTGTGHFSPIGGY+A +DMALILDV
Sbjct: 122 RTSQSTIDDFRKFVVKCTSSENCHMISTYHRGVFKQTGTGHFSPIGGYNAERDMALILDV 181
Query: 183 ARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVLLCRVAEMKAGK 242
ARFKYPPHWVPL LLWEAM++ D +TG RGFMLISR P LLYT L C+ +
Sbjct: 182 ARFKYPPHWVPLKLLWEAMDSIDQSTGKRRGFMLISRPHREPGLLYT-LSCK------DE 234
Query: 243 AWRSIA 248
+W IA
Sbjct: 235 SWIEIA 240
>AT1G03980.1 | chr1:1019311-1021871 REVERSE LENGTH=453
Length = 452
Score = 333 bits (855), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 156/246 (63%), Positives = 193/246 (78%), Gaps = 8/246 (3%)
Query: 3 AMASLYRRVLPSPPAVEFASEEGKRLFSEALESGTLQGFFNLISVFQTQSEPAFCGXXXX 62
+MASLYRR L SPPA++FAS EGK++F+EAL+ GT++GFF LIS FQTQSEPAFCG
Sbjct: 2 SMASLYRRSL-SPPAIDFASFEGKQIFNEALQKGTMEGFFGLISYFQTQSEPAFCGLASL 60
Query: 63 XXXXXXXXIDPGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVRSF 122
IDPGR+WKGPWRWFDESML+CCEPL+ VK +GI+F K+ CLAH +GA V +F
Sbjct: 61 SMVLNSLSIDPGRKWKGPWRWFDESMLECCEPLEIVKDKGISFGKVVCLAHSSGAKVEAF 120
Query: 123 RADQSTIHDFRHHLVRSASSQDCHLIASYHRKPFKQTGTGHFSPIGGYHAGQDMALILDV 182
R +QSTI DFR ++V+ ++S +CH+I++YHR+ KQTGTGHFSPIGGY+A +DMALILDV
Sbjct: 121 RTNQSTIDDFRKYVVKCSTSDNCHMISTYHRQVLKQTGTGHFSPIGGYNAERDMALILDV 180
Query: 183 ARFKYPPHWVPLPLLWEAMNTTDDATGLLRGFMLISRHTAAPSLLYTVLLCRVAEMKAGK 242
ARFKYPPHWVPL LLW+AM++ D +TG RGFMLISR P LLYT L C+ +
Sbjct: 181 ARFKYPPHWVPLKLLWDAMDSIDQSTGRRRGFMLISRPHREPGLLYT-LSCK------DE 233
Query: 243 AWRSIA 248
+W SIA
Sbjct: 234 SWISIA 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,477,865
Number of extensions: 207023
Number of successful extensions: 498
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)