Os05g0594500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Invasin/intimin cell-adhesion domain containing protein.
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Os05g0594500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Invasin/intimin cell-adhesion domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.17 | 0.629 | 12.3 | -0.139 | 2.91 | 0.937 | -0.785 | -1.1 | -0.214 | 23.8 | 21.87 | 11683 | -- | -- |
| 179.12 | 0.623 | 12.2 | -0.119 | 2.9 | 1.09 | -0.758 | -- | -0.125 | 23.8 | 19.42 | 21444 | -- | -- |
| 180.11 | 0.625 | 12.3 | -0.478 | 2.9 | 1.12 | -- | -1.73 | -0.355 | 23.9 | 23.3 | 20722 | -- | -- |
| 181.55 | 0.628 | 12.2 | -0.254 | 2.88 | 1.11 | -- | -- | -0.166 | 23.8 | 18.73 | 27100 | -- | -- |
| 661.9 | 1.2 | 12 | 1.5 | -- | -2.03 | -- | 2.75 | 0.655 | -- | 23.9 | 24006 | -- | -- |
| 203.31 | 0.668 | 12.1 | 0.744 | 2.94 | -- | -0.732 | -- | 0.296 | 23.8 | -- | -- | -- | -- |
| 205.63 | 0.672 | 12.1 | 0.773 | 2.94 | -- | -- | -- | 0.298 | 23.8 | -- | -- | -- | -- |
| 612.37 | 1.15 | 12.2 | 0.0561 | -- | 2.93 | -- | -- | -0.133 | -- | -16.13 | 900 | -- | -- |
| 181.97 | 0.628 | 12.2 | -- | 2.91 | 1.08 | -- | -- | -0.126 | 23.8 | 18.27 | 20842 | -- | -- |
| 749.9 | 1.28 | 12 | 0.861 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 221.37 | 0.696 | 12.1 | -- | 2.95 | -- | -- | -- | 0.212 | 23.9 | -- | -- | -- | -- |
| 612.45 | 1.15 | 12.2 | -- | -- | 2.96 | -- | -- | -0.142 | -- | -7.238 | 901 | -- | -- |
| 769.44 | 1.29 | 12.1 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 3 | 173.81 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 3 |
| 11 | 174.92 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 16 | 175.18 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 24 | 175.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 33 | 176.42 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 37 | 176.59 | temperature | 30.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 47 | 176.80 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 48 | 176.87 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 50 | 176.90 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 51 | 176.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 53 | 176.91 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 56 | 176.94 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 60 | 177.01 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 61 | 177.02 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 66 | 177.05 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 68 | 177.06 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 75 | 177.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 78 | 177.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 80 | 177.13 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 104 | 177.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 113 | 177.26 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 129 | 177.33 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 142 | 177.36 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 143 | 177.36 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 146 | 177.38 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 154 | 177.39 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 159 | 177.42 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 173 | 177.45 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 177 | 177.46 | temperature | 25.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 178 | 177.46 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 180 | 177.46 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 181 | 177.46 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 183 | 177.47 | temperature | 25.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 184 | 177.47 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 185 | 177.47 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 199 | 177.49 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 215 | 177.53 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 229 | 177.55 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 240 | 177.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 242 | 177.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 247 | 177.58 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 300 | 177.64 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 312 | 177.65 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 317 | 177.66 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 322 | 177.66 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 331 | 177.67 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 332 | 177.67 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 365 | 177.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 371 | 177.71 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 18 |
| 393 | 177.73 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 409 | 177.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 425 | 177.76 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 455 | 177.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 465 | 177.79 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 470 | 177.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 482 | 177.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 492 | 177.81 | radiation | 40.0 | 90 | < th | dose independent | rect. | 7 | 13 |
| 506 | 177.82 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 520 | 177.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 531 | 177.83 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 540 | 177.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 544 | 177.84 | humidity | 90.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 570 | 177.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 596 | 177.86 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 597 | 177.86 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 603 | 177.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 666 | 177.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 687 | 177.91 | humidity | 90.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 731 | 177.94 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 748 | 177.95 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 752 | 177.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 799 | 177.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 821 | 177.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 837 | 177.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 856 | 178.01 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 887 | 178.03 | humidity | 90.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 944 | 178.06 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 958 | 178.06 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 983 | 178.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 9 |