BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0594500 Os05g0594500|AK067256
(1098 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0594500 Invasin/intimin cell-adhesion domain containin... 1714 0.0
>Os05g0594500 Invasin/intimin cell-adhesion domain containing protein
Length = 1098
Score = 1714 bits (4438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1098 (78%), Positives = 866/1098 (78%)
Query: 1 MVWKSWGGVVFXXXXXXXXXXXXXXXXXXXXXXXFSKTPPRVSRSASAVFTFQVLHTNGS 60
MVWKSWGGVVF FSKTPPRVSRSASAVFTFQVLHTNGS
Sbjct: 1 MVWKSWGGVVFAVAAAAAALLCSSDAADDVVSVSFSKTPPRVSRSASAVFTFQVLHTNGS 60
Query: 61 GPCQDCLITCKVDGERAWECGRNSSSSNGTAVVRYSRLKDGNHTLAVCAGAGRPPXXXXX 120
GPCQDCLITCKVDGERAWECGRNSSSSNGTAVVRYSRLKDGNHTLAVCAGAGRPP
Sbjct: 61 GPCQDCLITCKVDGERAWECGRNSSSSNGTAVVRYSRLKDGNHTLAVCAGAGRPPTTTTT 120
Query: 121 XXCATYAWDVDTVAPTASVKAEAGFTSGSNVSVLVSFSEPCPGGGGFTCNATYCHLSVYG 180
CATYAWDVDTVAPTASVKAEAGFTSGSNVSVLVSFSEPCPGGGGFTCNATYCHLSVYG
Sbjct: 121 TTCATYAWDVDTVAPTASVKAEAGFTSGSNVSVLVSFSEPCPGGGGFTCNATYCHLSVYG 180
Query: 181 PGRVDPSSLQVLRPALQYSVHVTIPPELLYGRLILVMAKGFCTDAAGHHFIRTANSTFTL 240
PGRVDPSSLQVLRPALQYSVHVTIPPELLYGRLILVMAKGFCTDAAGHHFIRTANSTFTL
Sbjct: 181 PGRVDPSSLQVLRPALQYSVHVTIPPELLYGRLILVMAKGFCTDAAGHHFIRTANSTFTL 240
Query: 241 RFDRRSDSMNIGSSIPEKLLQIEGATRVVEATNDDKDLRVYLSFAEPVMNSSSQIXXXXX 300
RFDRRSDSMNIGSSIPEKLLQIEGATRVVEATNDDKDLRVYLSFAEPVMNSSSQI
Sbjct: 241 RFDRRSDSMNIGSSIPEKLLQIEGATRVVEATNDDKDLRVYLSFAEPVMNSSSQILAALT 300
Query: 301 XXXXXXXXXNRSTLGNRRFGYLVKRTSNTAVVTVSCDGNSIISRQGTPVSSSEPYTFLYD 360
NRSTLGNRRFGYLVKRTSNTAVVTVSCDGNSIISRQGTPVSSSEPYTFLYD
Sbjct: 301 ATDAILTPTNRSTLGNRRFGYLVKRTSNTAVVTVSCDGNSIISRQGTPVSSSEPYTFLYD 360
Query: 361 NQRPSVKLATSTVRTSSRNIPVLIKFAKPVFNFTSSAVQVSGGNLLSFHEASKSIYTAQI 420
NQRPSVKLATSTVRTSSRNIPVLIKFAKPVFNFTSSAVQVSGGNLLSFHEASKSIYTAQI
Sbjct: 361 NQRPSVKLATSTVRTSSRNIPVLIKFAKPVFNFTSSAVQVSGGNLLSFHEASKSIYTAQI 420
Query: 421 QAVDNLVSVHVAENSAQDVAGNTNLPSDRLEVRHYSVPXXXXXXXXXXXXXXXXXXXXXX 480
QAVDNLVSVHVAENSAQDVAGNTNLPSDRLEVRHYSVP
Sbjct: 421 QAVDNLVSVHVAENSAQDVAGNTNLPSDRLEVRHYSVPASSSSIAIVTTVIFTATAAFAT 480
Query: 481 XXXXXXXXXXXXGVIQRPPSYLVSEPSRNLLRMACHIQVFALSRWLSINLPVEYYELSKG 540
GVIQRPPSYLVSEPSRNLLRMACHIQVFALSRWLSINLPVEYYELSKG
Sbjct: 481 LLTVSTSSLLASGVIQRPPSYLVSEPSRNLLRMACHIQVFALSRWLSINLPVEYYELSKG 540
Query: 541 LEWSIPYMRLPWEGPSADPFVGYSTMPAIAYSEMLDRTALAADVLRRXXXXXXXXXXXXS 600
LEWSIPYMRLPWEGPSADPFVGYSTMPAIAYSEMLDRTALAADVLRR S
Sbjct: 541 LEWSIPYMRLPWEGPSADPFVGYSTMPAIAYSEMLDRTALAADVLRRPPAAPGVAMAMPS 600
Query: 601 TSPLDGKPLTAMEYRYLFENQDMKPEAQIIMKLQDLDGWKYFFRNIFWLAVIXXXXXXXX 660
TSPLDGKPLTAMEYRYLFENQDMKPEAQIIMKLQDLDGWKYFFRNIFWLAVI
Sbjct: 601 TSPLDGKPLTAMEYRYLFENQDMKPEAQIIMKLQDLDGWKYFFRNIFWLAVIAAAFLLLH 660
Query: 661 XXXXXXXXXRHRHSHTHVGALVFPRLELMLVILAMPCVSQASAALIRGGTTAGLAVGIXX 720
RHRHSHTHVGALVFPRLELMLVILAMPCVSQASAALIRGGTTAGLAVGI
Sbjct: 661 ATLLLYLKLRHRHSHTHVGALVFPRLELMLVILAMPCVSQASAALIRGGTTAGLAVGIVL 720
Query: 721 XXXXXXXXXXXXXXXXXXXXXGRLLQYKEVHQEGREYHWYQEIVRRTLGPGKRGQWTWKD 780
GRLLQYKEVHQEGREYHWYQEIVRRTLGPGKRGQWTWKD
Sbjct: 721 TGVLTAFLVALLLFLSLGVTTGRLLQYKEVHQEGREYHWYQEIVRRTLGPGKRGQWTWKD 780
Query: 781 PARTACLVKLGPLFEDLRGPPKYMLSQIAGGSGGKRAAERIIVSDDENEDAEAPFLQKLF 840
PARTACLVKLGPLFEDLRGPPKYMLSQIAGGSGGKRAAERIIVSDDENEDAEAPFLQKLF
Sbjct: 781 PARTACLVKLGPLFEDLRGPPKYMLSQIAGGSGGKRAAERIIVSDDENEDAEAPFLQKLF 840
Query: 841 GILRIYYTFLESVKRVALGIXXXXXXXXXXXXXXXXXXXLAIASFQLFFMVLKKPFIKKR 900
GILRIYYTFLESVKRVALGI LAIASFQLFFMVLKKPFIKKR
Sbjct: 841 GILRIYYTFLESVKRVALGIVAGAHASSDHSSRAHAVVVLAIASFQLFFMVLKKPFIKKR 900
Query: 901 VQLVEIVAVASEVLVFAACLRLXXXXXXXXXXXXXXXXXMLTVFAVALAAQVCNEWNALY 960
VQLVEIVAVASEVLVFAACLRL MLTVFAVALAAQVCNEWNALY
Sbjct: 901 VQLVEIVAVASEVLVFAACLRLVDSGGSAVAEGSGVGLAMLTVFAVALAAQVCNEWNALY 960
Query: 961 RQVRLLSSDRRSFVEGAKAAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVALXXXXXXT 1020
RQVRLLSSDRRSFVEGAKAAW AVAL T
Sbjct: 961 RQVRLLSSDRRSFVEGAKAAWVGLLLLVLPSSALGEQLEKMKKQQEQPEAVALGGGGGGT 1020
Query: 1021 ERSWLGQLREMAKASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKGPENSHSQW 1080
ERSWLGQLREMAKASF KAKGPENSHSQW
Sbjct: 1021 ERSWLGQLREMAKASFSKEGQGGEAEASGSRAKGGSRSMSSVASSSDSKAKGPENSHSQW 1080
Query: 1081 SSKSKGLYKDLEAIFSNR 1098
SSKSKGLYKDLEAIFSNR
Sbjct: 1081 SSKSKGLYKDLEAIFSNR 1098
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,592,263
Number of extensions: 1072286
Number of successful extensions: 2210
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2202
Number of HSP's successfully gapped: 1
Length of query: 1098
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 987
Effective length of database: 11,240,047
Effective search space: 11093926389
Effective search space used: 11093926389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 161 (66.6 bits)