BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0594500 Os05g0594500|AK067256
         (1098 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48200.1  | chr3:17832949-17837371 REVERSE LENGTH=1089         775   0.0  

>AT3G48200.1 | chr3:17832949-17837371 REVERSE LENGTH=1089
          Length = 1088

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1093 (40%), Positives = 587/1093 (53%), Gaps = 69/1093 (6%)

Query: 35   FSKTPPRVSRSASAVFTFQVLHTNGSGPCQDCLITCKVDGERAWECGRNSSSSNGTAVVR 94
            F K PP  SR  SA F+F     +G+  C  C   CK+D   + +C +          V 
Sbjct: 36   FLKAPPTTSRFTSAKFSFLAFE-DGNRTCSSCKFRCKLDDRISLDCHQRK--------VS 86

Query: 95   YSRLKDGNHTLAVCAGAGRPPXXXXXXXCATYAWDVDTVAPTASVKAEAGFTSGSNVSVL 154
            YS+L DG+HTL VCA             C  Y W VDTV+PTA V A   FTS  NVSV 
Sbjct: 87   YSKLLDGDHTLEVCAN------RMHGFGCNHYNWTVDTVSPTAFVTASMPFTSAQNVSVN 140

Query: 155  VSFSEPCPGGGGFTCNATY-CHLSVYGPGRVDPSSLQVLRPALQYSVHVTIPPELLYGRL 213
            ++F+EPC G GGF C++   C L VYG G+V PSS  VL   L+YS+ V + P+  YGR+
Sbjct: 141  ITFTEPCVGRGGFGCSSVNSCDLLVYGAGQVIPSSFTVLDQYLRYSLLVGLSPDAQYGRI 200

Query: 214  ILVMAKGFCTDAAGHHFIRTANSTFTLRFDRRSDSMNIGSSIPEKLLQIEGATRVVEATN 273
            +LVM K  C+D AG++F R   S F + FDRR+  +N+ + +PEKLL++   TR V+ATN
Sbjct: 201  VLVMNKSVCSDIAGNNFKRALGSRFFVHFDRRNVLVNLRTHVPEKLLKLNNQTRTVQATN 260

Query: 274  DDKDLRVYLSFAEPVMNSSSQIXXXXXXXXXXXXXXNRSTLGNRRFGYLVKRTSNTAVVT 333
            D+  L VYL F+EPV+NSS++I              + +T GNRRF ++V  TS  A+VT
Sbjct: 261  DNNKLNVYLYFSEPVLNSSAEILRRLNTNQGDLLPIDGNTNGNRRFAFMVTNTSRRAIVT 320

Query: 334  VSCDGNSIISRQGTPVSSSEPYTFLYDNQRPSVKL-ATSTVRTSSRNIPVLIKFAKPVFN 392
            V+ D NSI SR GTP S + P TFLYD +RP V L  TS +RT    IPV IKF KPVF 
Sbjct: 321  VTLDSNSIRSRHGTPASPTAPLTFLYDTERPHVILNTTSGMRTRKHTIPVWIKFMKPVFG 380

Query: 393  FTSSAVQVSGGNLLSFHEASKSIYTAQIQAVDNLVSVHVAENSAQDVAGNTNLPSDRLEV 452
            F SS V +SGG L SF E S SIY   ++A  + +S+ + EN  QDVAGN NL S+ L+V
Sbjct: 381  FNSSFVSISGGYLDSFEELSGSIYIVYVKANTSTLSIKIPENVTQDVAGNKNLASNILKV 440

Query: 453  RHYSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIQRPPSYLVSEPSRNLLR 512
            +HYSVP                                  G   RP  YL+S+P+RNL R
Sbjct: 441  KHYSVPMISSVISWVTTYIFLVTSFVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFR 500

Query: 513  MACHIQVFALSRWLSINLPVEYYELSKGLEWSIPYMRLPWEGP-------SADPFVGYST 565
             ACHIQ FAL+RWL + LPV+YYEL +G++W IPY  LPWE         +  P++G  +
Sbjct: 501  TACHIQFFALTRWLPVTLPVDYYELVRGIQWIIPYFPLPWETKIKEQIMVATSPYIGPHS 560

Query: 566  MPAIAYSEMLD-RTALAADVLRRXXXXXXXXXXXXSTSPLDGKPLTAMEYRYLFENQDMK 624
              +  ++ M++ +T+  A+                    + G PLTAMEYR  FE  ++K
Sbjct: 561  FISKTHNNMINLKTSTNAE-------------------SVFGLPLTAMEYRLFFETSNLK 601

Query: 625  PEAQIIMKLQDLDGWKYFFRNIFWLAVIXXXXXXXXXXXXXXXXXRHRHSHTH--VGALV 682
            PEA+ ++ L     W+ F R +FW+A+I                 +  HS      GA V
Sbjct: 602  PEAEHVLGLPHSTVWRDFNRIMFWIAIIGGSLVLLHIVLSLILKFKKAHSEKKRSFGAFV 661

Query: 683  FPRLELMLVILAMPCVSQASAALI------RGGTTAGLAVGIXXXXXXXXXXXXXXXXXX 736
            FPR EL L+ILA+P + +A+ +LI      +G   A + VGI                  
Sbjct: 662  FPRFELFLLILALPSICKAARSLIQGYFKHQGAAEASVIVGILVLCVVAILLLALFLFLS 721

Query: 737  XXXXXGRLLQYKEVHQEGREYHWYQEIVRRTLGPGKRGQWTWKDPARTACLVKLGPLFED 796
                 G+LLQYKE+HQEG+ +HWYQE++R TLGPGKRGQWTWK    +  L +LGP+FED
Sbjct: 722  VGITFGKLLQYKEIHQEGQTFHWYQELIRVTLGPGKRGQWTWKT-ENSVYLTRLGPVFED 780

Query: 797  LRGPPKYMLSQIAGGSGGKRAAERIIVSDDENEDAEAPFLQKLFGILRIYYTFLESVKRV 856
            LRGPPKYML+QI+G +  K+  +RII SDDENEDAEAP +QKLFGILRIYYTFLE+VKRV
Sbjct: 781  LRGPPKYMLTQISGSNPLKQQDDRIIASDDENEDAEAPCIQKLFGILRIYYTFLETVKRV 840

Query: 857  ALGIXXXXXXXXXXXXXXXXXXXLAIASFQLFFMVLKKPFIKKRVQLVEIVAVASEVLVF 916
             LGI                   L+I SFQLFF++LKKPFIKK+VQLVEI+++A +V VF
Sbjct: 841  CLGI-IAGAFLDNETAKTPIVVLLSITSFQLFFLLLKKPFIKKKVQLVEIISIACQVGVF 899

Query: 917  AACLRLXXXXXXXXXXXXXXXXXMLTVFAVALAAQVCNEWNALYRQVRLLSSDRRSFVEG 976
            A+CL L                 M+ +F +     +CNEW +LY+Q + L    RSF+ G
Sbjct: 900  ASCLML-LAKDFPEASGKKLGIFMVVLFLIGFIMLMCNEWYSLYKQTKRLDQINRSFLSG 958

Query: 977  AKAAWXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------AVALXXXXXXTERSWL 1025
             K                                            +        ++ WL
Sbjct: 959  LKMFIIGLAALILPQKMIKNKIPVAQLEARSSSNGGTTPEFRYRNSSGSRSSGSLDKPWL 1018

Query: 1026 GQLREMAKASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKGPENSHSQWSSKSK 1085
             Q+REMAK+SF                                 +   + S + + S+ K
Sbjct: 1019 KQIREMAKSSFTRDRSNSKVPSDPSCSKSGWSSSIWGTKTSGSSS---KESSADYKSRPK 1075

Query: 1086 GLYKDLEAIFSNR 1098
            GLYKDLEAIF+++
Sbjct: 1076 GLYKDLEAIFASK 1088



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,249,752
Number of extensions: 635858
Number of successful extensions: 1289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1278
Number of HSP's successfully gapped: 1
Length of query: 1098
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 989
Effective length of database: 8,118,225
Effective search space: 8028924525
Effective search space used: 8028924525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)