Os05g0588200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RuvA domain 2-like containing protein.
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Os05g0588200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RuvA domain 2-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.88 | 0.525 | 5.73 | -1.07 | 1.15 | -1.7 | -0.581 | -0.469 | -0.157 | 2.87 | 31.08 | 230 | -- | -- |
| 125.02 | 0.521 | 5.74 | -1.14 | 1.17 | -1.74 | -0.678 | -- | -0.173 | 2.83 | 31.49 | 209 | -- | -- |
| 125.63 | 0.522 | 5.72 | -1.03 | 1.16 | -1.66 | -- | -0.537 | -0.141 | 2.63 | 30.93 | 180 | -- | -- |
| 126.37 | 0.524 | 5.73 | -1.13 | 1.18 | -1.74 | -- | -- | -0.164 | 2.66 | 31.64 | 182 | -- | -- |
| 145.77 | 0.562 | 5.74 | -1.28 | -- | -1.65 | -- | 0.554 | -0.164 | -- | 34.68 | 1051 | -- | -- |
| 161.6 | 0.596 | 5.67 | -0.745 | 0.682 | -- | -0.712 | -- | 0.127 | 2.01 | -- | -- | -- | -- |
| 163.4 | 0.599 | 5.67 | -0.723 | 0.679 | -- | -- | -- | 0.132 | 1.74 | -- | -- | -- | -- |
| 146.01 | 0.563 | 5.73 | -1.18 | -- | -1.66 | -- | -- | -0.14 | -- | 33.9 | 1041 | -- | -- |
| 156.58 | 0.583 | 5.69 | -- | 0.999 | -1.28 | -- | -- | 0.0537 | 2.53 | 32.9 | 181 | -- | -- |
| 191.41 | 0.646 | 5.66 | -0.695 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 177.17 | 0.623 | 5.65 | -- | 0.666 | -- | -- | -- | 0.212 | 1.7 | -- | -- | -- | -- |
| 178.13 | 0.622 | 5.68 | -- | -- | -1.18 | -- | -- | 0.0633 | -- | 36.1 | 1013 | -- | -- |
| 204.15 | 0.667 | 5.65 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 16 | 118.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 51 | 121.06 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 22 |
| 62 | 121.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 81 | 122.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 88 | 122.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 94 | 122.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 107 | 122.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 120 | 123.31 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 11 |
| 147 | 123.80 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 13 |
| 154 | 123.94 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 184 | 124.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 222 | 125.14 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 18 |
| 225 | 125.21 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 231 | 125.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 251 | 125.63 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 18 |
| 255 | 125.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 256 | 125.68 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 262 | 125.74 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 275 | 125.85 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 16 |
| 299 | 126.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 312 | 126.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 319 | 126.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 347 | 126.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 349 | 126.64 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 358 | 126.75 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 375 | 126.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 388 | 126.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 397 | 127.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 10 |
| 422 | 127.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 443 | 127.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 478 | 127.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 513 | 127.49 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 4 |
| 604 | 127.86 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 11 |
| 609 | 127.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 747 | 128.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 13 |
| 795 | 128.43 | temperature | 15 | 720 | > th | dose dependent | sin | 18 | NA |
| 851 | 128.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 16 |
| 901 | 128.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 16 |