BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0588200 Os05g0588200|AK109323
         (248 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12790.1  | chr1:4359597-4361222 REVERSE LENGTH=251            298   2e-81

>AT1G12790.1 | chr1:4359597-4361222 REVERSE LENGTH=251
          Length = 250

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 176/223 (78%)

Query: 26  GVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFLSISPDFIFNNGELSVAFIFETNWDC 85
           GVC MS +W+ +Q+PSLINFI+AFL+ANS+RLNF+SI PD IFN G +S+AF+F T WD 
Sbjct: 28  GVCIMSNAWKVEQEPSLINFISAFLSANSFRLNFVSIPPDLIFNCGGVSIAFVFVTKWDF 87

Query: 86  QNEGAVFSRVNMLKRQLKHLYVVVAVPTKEQNESFNRSYHKYGMKLGFPTFVPVTDPEMG 145
            N  ++FSRV  LK Q   LYVV  + TKEQ++SF RSY +Y M+ G P FV VTD EMG
Sbjct: 88  SNVASIFSRVKRLKGQFAQLYVVATLSTKEQSDSFMRSYFQYEMEFGKPAFVQVTDAEMG 147

Query: 146 FEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTDSFLRVLTSIPGIDNHDANALAQAIG 205
           FEKIVKIAH+ GVCKQQ + S+LK ER++ VQ T+ F+R +TSIP I+ HDAN L QAIG
Sbjct: 148 FEKIVKIAHSRGVCKQQKVASKLKVERKRTVQDTNIFIRFVTSIPNINKHDANTLYQAIG 207

Query: 206 SIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQYYLSPKIN 248
           SIEAIAKASK+ IL NTDLS+ KA+T+ RFF+DP++YLSPK N
Sbjct: 208 SIEAIAKASKEDILANTDLSSKKADTLTRFFQDPEFYLSPKFN 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,904,698
Number of extensions: 187477
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)