BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0588200 Os05g0588200|AK109323
         (248 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0588200  RuvA domain 2-like containing protein               496   e-141

>Os05g0588200 RuvA domain 2-like containing protein
          Length = 248

 Score =  496 bits (1277), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/248 (95%), Positives = 238/248 (95%)

Query: 1   MERSTHSTGWTCLXXXXXXXXXXGRGVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFL 60
           MERSTHSTGWTCL          GRGVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFL
Sbjct: 1   MERSTHSTGWTCLPPPPPEPAAPGRGVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFL 60

Query: 61  SISPDFIFNNGELSVAFIFETNWDCQNEGAVFSRVNMLKRQLKHLYVVVAVPTKEQNESF 120
           SISPDFIFNNGELSVAFIFETNWDCQNEGAVFSRVNMLKRQLKHLYVVVAVPTKEQNESF
Sbjct: 61  SISPDFIFNNGELSVAFIFETNWDCQNEGAVFSRVNMLKRQLKHLYVVVAVPTKEQNESF 120

Query: 121 NRSYHKYGMKLGFPTFVPVTDPEMGFEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTD 180
           NRSYHKYGMKLGFPTFVPVTDPEMGFEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTD
Sbjct: 121 NRSYHKYGMKLGFPTFVPVTDPEMGFEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTD 180

Query: 181 SFLRVLTSIPGIDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQ 240
           SFLRVLTSIPGIDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQ
Sbjct: 181 SFLRVLTSIPGIDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQ 240

Query: 241 YYLSPKIN 248
           YYLSPKIN
Sbjct: 241 YYLSPKIN 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,167,518
Number of extensions: 258033
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)