Os05g0559900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA-binding arm domain containing protein.
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Os05g0559900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA-binding arm domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.14 | 0.221 | 11.9 | 0.6 | 0.63 | -0.574 | 0.192 | 1.87 | 0.422 | 1.82 | 25.04 | 1416 | -- | -- |
| 23.72 | 0.227 | 11.9 | 0.109 | 0.603 | -0.388 | 0.245 | -- | 0.359 | 1.76 | 25.29 | 7418 | -- | -- |
| 22.28 | 0.22 | 11.9 | 0.608 | 0.633 | -0.579 | -- | 1.92 | 0.426 | 1.87 | 24.97 | 1408 | -- | -- |
| 23.07 | 0.225 | 11.9 | 0.0601 | 0.348 | -0.653 | -- | -- | 0.342 | 1.33 | 22.34 | 7414 | -- | -- |
| 29.47 | 0.254 | 11.9 | 0.23 | -- | -1.03 | -- | 1.32 | 0.361 | -- | 24.97 | 1408 | -- | -- |
| 29.8 | 0.256 | 12 | -0.0641 | 0.593 | -- | 0.181 | -- | 0.24 | 1.83 | -- | -- | -- | -- |
| 29.92 | 0.256 | 12 | -0.0699 | 0.594 | -- | -- | -- | 0.239 | 1.86 | -- | -- | -- | -- |
| 28.15 | 0.248 | 11.9 | 0.13 | -- | -0.963 | -- | -- | 0.396 | -- | 22.34 | 7414 | -- | -- |
| 23.16 | 0.225 | 11.9 | -- | 0.356 | -0.635 | -- | -- | 0.333 | 1.36 | 22.34 | 7414 | -- | -- |
| 51.25 | 0.335 | 12 | -0.0454 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 30.05 | 0.256 | 12 | -- | 0.592 | -- | -- | -- | 0.247 | 1.86 | -- | -- | -- | -- |
| 28.58 | 0.25 | 11.9 | -- | -- | -0.939 | -- | -- | 0.378 | -- | 22.34 | 7414 | -- | -- |
| 51.3 | 0.334 | 12 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 21.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 67 | 21.50 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 97 | 21.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 148 | 21.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 162 | 21.97 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 180 | 22.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 274 | 22.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 277 | 22.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 291 | 22.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 309 | 22.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 332 | 22.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 359 | 22.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 384 | 22.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 22 |
| 393 | 22.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 394 | 22.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 397 | 22.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 408 | 22.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 455 | 22.82 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 518 | 22.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 527 | 22.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 535 | 22.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 572 | 22.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 594 | 22.98 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 663 | 23.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 678 | 23.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 693 | 23.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 731 | 23.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 773 | 23.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 788 | 23.20 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 834 | 23.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 838 | 23.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 839 | 23.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 855 | 23.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 922 | 23.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 936 | 23.31 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 949 | 23.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 959 | 23.33 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 960 | 23.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 998 | 23.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |