BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0559900 Os05g0559900|AK067197
         (1032 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79830.4  | chr1:30028110-30033508 REVERSE LENGTH=977          645   0.0  

>AT1G79830.4 | chr1:30028110-30033508 REVERSE LENGTH=977
          Length = 976

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/692 (54%), Positives = 466/692 (67%), Gaps = 37/692 (5%)

Query: 361  SIIVSNDSNSQNESVP---TSADVPVGLVEVGSNSNDLRKEEN----IQGSVTTSNHLES 413
            S+I  +D +    S+P   +S ++   +V+  S   D R + +     Q S + +N  +S
Sbjct: 276  SLIFESDGSPYESSIPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDS 335

Query: 414  VGAVAELEKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKSKSAEAE 473
               + ELEK ++E+KM+E ALQGAARQ+Q+KADEIA+LM+ENEQLKS  +DLK KS EAE
Sbjct: 336  ADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAE 395

Query: 474  MDALKDEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEGEEL 533
            +++L++EYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEII+QVMAEGEEL
Sbjct: 396  VESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455

Query: 534  SKKQAAQEATMRKLRAQVRELEEEKQRLNSKIQVEETKVESIKRDKAATEKLLQETIERN 593
            SKKQAAQEA +RKLRAQ+RE EEEK+ L +K+Q EE KVESIKRDK ATEKLLQETIE++
Sbjct: 456  SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKH 515

Query: 594  QTELAAQKEFYTXXXXXXXXXXXXXXXRVNTEAKVELESRLREACEKENILIKTIEELRH 653
            Q EL +QK++Y+               R N EA+ ELE+RL+EA E+E++L++ +EELR 
Sbjct: 516  QAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQ 575

Query: 654  ALTXXXXXXXXXXXXLKRDYDDLQRRYQ--------------------SSELRYNELVTQ 693
             L+             + + +DLQRRYQ                    +SE R  EL+TQ
Sbjct: 576  TLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRCFVVSMHISFFGYRLLASERRCEELITQ 635

Query: 694  VPESTRPLLRQIEAMQETAARRAEAWAGVERTLNSRLQXXXXXXXXXXXXXRSVNERLSQ 753
            VPESTRPLLRQIEAMQET+ R AEAWA VERTLNSRLQ             RSVNERLSQ
Sbjct: 636  VPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQ 695

Query: 754  SSSRITVLETQITILRTEQTQLSRSLEKERQRASESRQEYLAIKEEAAMQEGRAKQLEEE 813
            + SRI VLE Q++ LR EQ QLS+SLEKERQRA+E+RQEYLA KEEA   EGRA QLE E
Sbjct: 696  TLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVE 755

Query: 814  IKELRTRHKKELQDAAXXXXXXXXXXXXXXXXXXXXXXT----SSRDAPKIPLPDQT--- 866
            I+ELR +HK+ELQ+                        T    SS  + ++P+  Q    
Sbjct: 756  IRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAF 815

Query: 867  RNAPL-RKXXXXXXXXXXXXXHFLQASLDLSDNASLERRMSAESNMS-YYLRSMTPSAFE 924
             N  L RK             +FLQASLD SD  S E+R   E+ MS YY++S+TPSA+E
Sbjct: 816  ENGSLPRKLSSASSLGSMEESYFLQASLDSSDKFS-EKRSMPEATMSPYYMKSITPSAYE 874

Query: 925  SALRQKDGELASYTSRLASLESIRNSLAEELVKMTEQCEKLRTEASALPGLRAELEALKQ 984
            + LRQK+GELASY +RLAS+ESIR+SLAEELVKMT +CEKLR EA  +PG++AELEAL+Q
Sbjct: 875  ATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQ 934

Query: 985  RHFQAXXXXXXXXXXXXXXRNDIVDLKEMYRE 1016
            RH  A              R DIVDLKEMYRE
Sbjct: 935  RHAAALELMGERDEELEELRADIVDLKEMYRE 966




 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 5/93 (5%)

Query: 1  MAWWSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEEKRD---DEEGSGSHASNS 57
          MAW+SGKVSLGG  D+ GAVNK  ESVKNIEKNFD+ALG ++K D   ++  S       
Sbjct: 1  MAWFSGKVSLGGFPDLTGAVNKFQESVKNIEKNFDNALGFDDKSDSAAEDAASSMWPPAV 60

Query: 58 DRIGFFNPVMAFMGNNGEE--DSAEASEKQQPP 88
          D    F+PVM+FMGN  +E  D+ E S + + P
Sbjct: 61 DTKSLFDPVMSFMGNTSDEKPDTLEDSVRTENP 93



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.303    0.120    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,742,462
Number of extensions: 724869
Number of successful extensions: 5612
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 5608
Number of HSP's successfully gapped: 86
Length of query: 1032
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 923
Effective length of database: 8,118,225
Effective search space: 7493121675
Effective search space used: 7493121675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 117 (49.7 bits)