BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0559900 Os05g0559900|AK067197
         (1032 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0559900  tRNA-binding arm domain containing protein         1810   0.0  

>Os05g0559900 tRNA-binding arm domain containing protein
          Length = 1032

 Score = 1810 bits (4689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1032 (88%), Positives = 917/1032 (88%)

Query: 1    MAWWSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEEKRDDEEGSGSHASNSDRI 60
            MAWWSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEEKRDDEEGSGSHASNSDRI
Sbjct: 1    MAWWSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEEKRDDEEGSGSHASNSDRI 60

Query: 61   GFFNPVMAFMGNNGEEDSAEASEKQQPPKXXXXXXXXXXXXXXPTSKVDASEESESTQSP 120
            GFFNPVMAFMGNNGEEDSAEASEKQQPPK              PTSKVDASEESESTQSP
Sbjct: 61   GFFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTEAPTSKVDASEESESTQSP 120

Query: 121  KPSEQGETLISSTEPPVSKAEVSEQLATPKTPKSLSATEEKPSHSTESPTYKGDSEAPQS 180
            KPSEQGETLISSTEPPVSKAEVSEQLATPKTPKSLSATEEKPSHSTESPTYKGDSEAPQS
Sbjct: 121  KPSEQGETLISSTEPPVSKAEVSEQLATPKTPKSLSATEEKPSHSTESPTYKGDSEAPQS 180

Query: 181  PTDPSTAEENSGSTETGNTIETGNQDHQETKYSGPNDEAPQSQIGESDRGIPDGTKPSSP 240
            PTDPSTAEENSGSTETGNTIETGNQDHQETKYSGPNDEAPQSQIGESDRGIPDGTKPSSP
Sbjct: 181  PTDPSTAEENSGSTETGNTIETGNQDHQETKYSGPNDEAPQSQIGESDRGIPDGTKPSSP 240

Query: 241  TELDQSGNTGTTEYLHAGTENIDDKNAIQSQPLDSILASSDDVNEAVKIVKGADDRNEIS 300
            TELDQSGNTGTTEYLHAGTENIDDKNAIQSQPLDSILASSDDVNEAVKIVKGADDRNEIS
Sbjct: 241  TELDQSGNTGTTEYLHAGTENIDDKNAIQSQPLDSILASSDDVNEAVKIVKGADDRNEIS 300

Query: 301  SSHENTDTVDQASHVEVIEHDEHTNAAENDEEANRTEAQVATVVEREENTMVQLEDLSSM 360
            SSHENTDTVDQASHVEVIEHDEHTNAAENDEEANRTEAQVATVVEREENTMVQLEDLSSM
Sbjct: 301  SSHENTDTVDQASHVEVIEHDEHTNAAENDEEANRTEAQVATVVEREENTMVQLEDLSSM 360

Query: 361  SIIVSNDSNSQNESVPTSADVPVGLVEVGSNSNDLRKEENIQGSVTTSNHLESVGAVAEL 420
            SIIVSNDSNSQNESVPTSADVPVGLVEVGSNSNDLRKEENIQGSVTTSNHLESVGAVAEL
Sbjct: 361  SIIVSNDSNSQNESVPTSADVPVGLVEVGSNSNDLRKEENIQGSVTTSNHLESVGAVAEL 420

Query: 421  EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKSKSAEAEMDALKDE 480
            EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKSKSAEAEMDALKDE
Sbjct: 421  EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKSKSAEAEMDALKDE 480

Query: 481  YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEGEELSKKQAAQ 540
            YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEGEELSKKQAAQ
Sbjct: 481  YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEGEELSKKQAAQ 540

Query: 541  EATMRKLRAQVRELEEEKQRLNSKIQVEETKVESIKRDKAATEKLLQETIERNQTELAAQ 600
            EATMRKLRAQVRELEEEKQRLNSKIQVEETKVESIKRDKAATEKLLQETIERNQTELAAQ
Sbjct: 541  EATMRKLRAQVRELEEEKQRLNSKIQVEETKVESIKRDKAATEKLLQETIERNQTELAAQ 600

Query: 601  KEFYTXXXXXXXXXXXXXXXRVNTEAKVELESRLREACEKENILIKTIEELRHALTXXXX 660
            KEFYT               RVNTEAKVELESRLREACEKENILIKTIEELRHALT    
Sbjct: 601  KEFYTNALNAAKEAEALAEARVNTEAKVELESRLREACEKENILIKTIEELRHALTRQEQ 660

Query: 661  XXXXXXXXLKRDYDDLQRRYQSSELRYNELVTQVPESTRPLLRQIEAMQETAARRAEAWA 720
                    LKRDYDDLQRRYQSSELRYNELVTQVPESTRPLLRQIEAMQETAARRAEAWA
Sbjct: 661  EAAFREERLKRDYDDLQRRYQSSELRYNELVTQVPESTRPLLRQIEAMQETAARRAEAWA 720

Query: 721  GVERTLNSRLQXXXXXXXXXXXXXRSVNERLSQSSSRITVLETQITILRTEQTQLSRSLE 780
            GVERTLNSRLQ             RSVNERLSQSSSRITVLETQITILRTEQTQLSRSLE
Sbjct: 721  GVERTLNSRLQEAEAKAAAAEEKERSVNERLSQSSSRITVLETQITILRTEQTQLSRSLE 780

Query: 781  KERQRASESRQEYLAIKEEAAMQEGRAKQLEEEIKELRTRHKKELQDAAXXXXXXXXXXX 840
            KERQRASESRQEYLAIKEEAAMQEGRAKQLEEEIKELRTRHKKELQDAA           
Sbjct: 781  KERQRASESRQEYLAIKEEAAMQEGRAKQLEEEIKELRTRHKKELQDAAEHRELLEKDLE 840

Query: 841  XXXXXXXXXXXTSSRDAPKIPLPDQTRNAPLRKXXXXXXXXXXXXXHFLQASLDLSDNAS 900
                       TSSRDAPKIPLPDQTRNAPLRK             HFLQASLDLSDNAS
Sbjct: 841  REKAARAELEKTSSRDAPKIPLPDQTRNAPLRKLSSSGSINSLEESHFLQASLDLSDNAS 900

Query: 901  LERRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTE 960
            LERRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTE
Sbjct: 901  LERRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTE 960

Query: 961  QCEKLRTEASALPGLRAELEALKQRHFQAXXXXXXXXXXXXXXRNDIVDLKEMYREXXXX 1020
            QCEKLRTEASALPGLRAELEALKQRHFQA              RNDIVDLKEMYRE    
Sbjct: 961  QCEKLRTEASALPGLRAELEALKQRHFQALELMGERDEELEELRNDIVDLKEMYREQVDL 1020

Query: 1021 XXXXXXXXGARV 1032
                    GARV
Sbjct: 1021 LVSQLQSLGARV 1032



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.303    0.120    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,609,091
Number of extensions: 1044813
Number of successful extensions: 6426
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6437
Number of HSP's successfully gapped: 1
Length of query: 1032
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 921
Effective length of database: 11,240,047
Effective search space: 10352083287
Effective search space used: 10352083287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 161 (66.6 bits)