Os05g0559600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 43 protein.
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Os05g0559600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 43 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.54 | 0.284 | 10.1 | -0.204 | 1.43 | 0.803 | 0.228 | -0.069 | 0.0545 | 23.8 | 16.5 | 583 | -- | -- |
| 36.37 | 0.281 | 10.1 | -0.185 | 1.48 | 0.825 | 0.256 | -- | 0.0576 | 23.9 | 16.4 | 472 | -- | -- |
| 36.63 | 0.282 | 10.1 | -0.182 | 1.46 | 0.815 | -- | 0.0869 | 0.063 | 23.9 | 16.4 | 512 | -- | -- |
| 36.61 | 0.282 | 10.1 | -0.197 | 1.48 | 0.824 | -- | -- | 0.0549 | 23.9 | 16.5 | 476 | -- | -- |
| 141.62 | 0.554 | 10.1 | -0.411 | -- | 1.63 | -- | 0.0636 | -0.0738 | -- | 16.6 | 851 | -- | -- |
| 45.54 | 0.316 | 10.1 | 0.0127 | 1.53 | -- | 0.26 | -- | 0.19 | 23.3 | -- | -- | -- | -- |
| 45.83 | 0.317 | 10.1 | 0.00206 | 1.53 | -- | -- | -- | 0.189 | 23.3 | -- | -- | -- | -- |
| 141.61 | 0.554 | 10.1 | -0.425 | -- | 1.62 | -- | -- | -0.0768 | -- | 16.58 | 850 | -- | -- |
| 37.52 | 0.285 | 10.1 | -- | 1.48 | 0.735 | -- | -- | 0.0883 | 23.9 | 16.7 | 472 | -- | -- |
| 192.41 | 0.648 | 10 | 0.0408 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 45.83 | 0.317 | 10.1 | -- | 1.53 | -- | -- | -- | 0.189 | 23.3 | -- | -- | -- | -- |
| 145.87 | 0.563 | 10.1 | -- | -- | 1.46 | -- | -- | -0.00847 | -- | 16.8 | 842 | -- | -- |
| 192.45 | 0.648 | 10 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 4 | 34.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 5 | 34.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 7 | 34.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 18 | 34.91 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 41 | 35.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 52 | 35.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 84 | 35.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 115 | 35.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 137 | 35.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 145 | 35.81 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 253 | 36.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 18 |
| 260 | 36.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 261 | 36.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 506 | 36.73 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 528 | 36.77 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 9 |
| 600 | 36.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 626 | 36.94 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 20 |
| 681 | 37.02 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 740 | 37.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 751 | 37.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 757 | 37.14 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 8 |
| 801 | 37.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 870 | 37.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 938 | 37.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 963 | 37.39 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 12 |