BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0559600 Os05g0559600|AK068237
         (451 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27600.1  | chr1:9604083-9605881 REVERSE LENGTH=395            266   2e-71
AT2G37090.1  | chr2:15587671-15589223 REVERSE LENGTH=352          177   9e-45
AT5G67230.1  | chr5:26822506-26824181 FORWARD LENGTH=493           89   6e-18
AT4G36890.1  | chr4:17379631-17381627 REVERSE LENGTH=526           85   8e-17

>AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395
          Length = 394

 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 3/261 (1%)

Query: 188 DLDITVRKLLIIVTITTVRPQQAYYLNRLAHVLKTVQSPLLWLVVEWPDQSFQTAEILRS 247
           +++   +KLLI+VT T  R  QAYYLNR+A  L+ V+SP+LW+VVE    SF+T+EILR 
Sbjct: 134 EVNFVPKKLLIVVTPTYNRAMQAYYLNRVAQTLRLVESPVLWIVVEGNVASFETSEILRK 193

Query: 248 SGVMYRHLICRKNTTSVRKIAVCQRNTAIYHIKKHRLDGIMHFADEERSYMSDVFEEMRK 307
           +GVMYRHL+C++N TS++   V QRNTA+ HI+ H+LDGI++FAD++  Y  ++F+ +R+
Sbjct: 194 TGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQ 253

Query: 308 IRRFGAWPVAIHTGIKYRVVLEGPICKGNRVTGWNTIQNIQKKSAVRRFPVGFSGFAFNS 367
           I RFG WPVA+    K + +LEGP+C G++V GW+T    +K   +RRF V  SGFAFNS
Sbjct: 254 ISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHT---NEKSKRLRRFHVDMSGFAFNS 310

Query: 368 TMLWDPERWNRPPMDSVIVHSGGRGGLQESRFIEKLVKHERQIEGLPEDCNRVMVWNFNL 427
           T+LWDP+RW RP           + G QE+ FIE++V  E ++EG+P  C+ ++ W+ +L
Sbjct: 311 TILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHL 370

Query: 428 EPPLLNVPPGWSLHKNLDAVI 448
           +   +  P GW++ KNL A+I
Sbjct: 371 DALDVPYPQGWAIQKNLQALI 391



>AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352
          Length = 351

 Score =  177 bits (450), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 186/365 (50%), Gaps = 36/365 (9%)

Query: 75  SPERSKSRGLSCKRLAFHLFVCFMVGIFIGFMP-----FFSVDVSQKIVSENGRLPFDEG 129
           S ERSK +    K+   H  +CF++G F GF P     FFS   +    S    +P    
Sbjct: 3   SLERSKKKAQVWKKAVIHFSLCFVMGFFTGFAPAGKASFFSNFETTSYTSTKSPIP---- 58

Query: 130 AVDRGMVDGKVKELETXXXXXXXXXXXXXXXXXXXXXXAMLDDEADF-VESAPAIPDIND 188
                      +  E                            EA+    S     D N 
Sbjct: 59  ----------PQPFENATYTQHSLLNRTLINSQSQAPAPAESREAEGETRSLSEKEDENQ 108

Query: 189 LDITVRKLLIIVT-ITTVRPQQAYYLNRLAHVLKTVQSPLLWLVVEWPD--QSFQTAEIL 245
           + +T R L+I+VT I T    +   L R+A+ L+ V  PLLW+VVE     +   ++ +L
Sbjct: 109 VKVTPRGLVIVVTPIITKDRYKNVLLRRMANTLRLVPPPLLWIVVEKHSDGEEKSSSTML 168

Query: 246 RSSGVMYRHLICRKNTTSVRKIAVCQRNTAIYHIKKHRLDGIMHFADEERSYMSDVFEEM 305
           R +G+MYR ++ +++ TS+      QRN A+ HI+ H+L GI+HFA     Y  D F ++
Sbjct: 169 RKTGIMYRRIVFKEDFTSLESELDHQRNLALRHIEHHKLSGIVHFAGLNNIYDLDFFVKI 228

Query: 306 RKIRRFGAWPVAIHTGIKYRVVLEGPICKGNRVTGWNTIQNIQKKSAVRRFPVGFSGFAF 365
           R I  FG WP+A+ +  + RVV+EGP+C+ ++V GW+ ++ I  ++  +  P+  S FAF
Sbjct: 229 RDIEVFGTWPMALLSANRKRVVVEGPVCESSQVLGWH-LRKINNETETKP-PIHISSFAF 286

Query: 366 NSTMLWDPERWNRPPMDSVIVHSGGRGGLQES-RFIEKLV-KHERQIEGLP-EDCNRVMV 422
           NS++LWDPERW RP        S   G  Q+S ++++++V + + +++GLP +DC+++M+
Sbjct: 287 NSSILWDPERWGRP--------SSVEGTKQDSIKYVKQVVLEDDTKLKGLPAQDCSKIML 338

Query: 423 WNFNL 427
           W    
Sbjct: 339 WRLKF 343



>AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493
          Length = 492

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 134/290 (46%), Gaps = 37/290 (12%)

Query: 195 KLLIIVTITTVRPQQAYYLNRLAHVLKTVQSPLLWLVVEWPDQSFQTAEILRSSGVMYRH 254
           + +I+VT T VR  QA +L  + H L  V   L+W+VVE    + +TA  +  SG+   H
Sbjct: 152 RTVIVVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGITNETASFIAKSGLKTIH 211

Query: 255 LICRK---NTTSVR-KIAVCQRNTAIYHIKKHRLDGIMHFADEERSYMSDVFEEMRKIRR 310
           L   +   NT   R K+    R  A+  +++ +LDGI+ FAD+   +  ++F+E++ ++ 
Sbjct: 212 LGFDQKMPNTWEDRHKLETKMRLHALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKW 271

Query: 311 FGAWPVAI--HTGI-----------------KYRVVLEGPICKGN-RVTGWN--TIQNIQ 348
           FGA  V I  H+G                  K  + ++GP C  + ++ GW+    Q   
Sbjct: 272 FGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYA 331

Query: 349 KKSAV---RRFPV-----GFSGFAFNSTMLWDPERWNRPPMDSVIVHSGGRGGLQESRFI 400
           KK+AV    + PV      +SGF  NS +LW     ++P    V   S    G  E    
Sbjct: 332 KKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLLDDGYAEIESP 389

Query: 401 EKLVKHERQIEGLPEDCNRVMVWNFNLEPPL-LNVPPGWSLHKNLDAVIP 449
             LVK    +E L     RV++W   +E       PPGW +   L+  +P
Sbjct: 390 LSLVKDPSMVEPLGSCGRRVLLWWLRVEARADSKFPPGWIIKSPLEITVP 439



>AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526
          Length = 525

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 49/296 (16%)

Query: 195 KLLIIVTITTVRPQQAYYLNRLAHVLKTVQSPLLWLVVEWPDQSFQTAEILRSSGVMYRH 254
           K++I VT T VR  QA +L  + H L  V   L+W+VVE    + +T  I+  SG+   H
Sbjct: 160 KMVIAVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGATNETGLIIAKSGLRTIH 219

Query: 255 LICRK---NTTSVR-KIAVCQRNTAIYHIKKHRLDGIMHFADEERSYMSDVFEEMRKIRR 310
           +   +   NT   R K+ V  R  A+  +++ +LDGI+ FAD+   +  ++F+E++ ++ 
Sbjct: 220 VGIDQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKW 279

Query: 311 FGAWPVAI--HTGIKYRVVL---------------------EGPICKG-NRVTGWNTIQN 346
           FG   V I  H+G    +VL                     +GP C   +++ GW+    
Sbjct: 280 FGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNT 339

Query: 347 ----------IQKKSAVRRFPVGFSGFAFNSTMLWDPERWNRPPMDSVIVHSGGRGGLQE 396
                     I   +AV    + +SGF  NS +LW+ E  N+P            G L E
Sbjct: 340 LPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWE-EAENKPEWVKDF------GSLNE 392

Query: 397 SRFIE---KLVKHERQIEGLPEDCNRVMVWNFNLEPPL-LNVPPGWSLHKNLDAVI 448
           +  +E    L+K    +E L     +V++W   +E       PPGW +   L+  +
Sbjct: 393 NEGVESPLSLLKDPSMVEPLGSCGRQVLLWWLRVEARADSKFPPGWIIDPPLEITV 448



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,506,316
Number of extensions: 374470
Number of successful extensions: 762
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 4
Length of query: 451
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,310,137
Effective search space: 2900237813
Effective search space used: 2900237813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)