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Os05g0558800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1675 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.00992) R2 : 0.529
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.512 (0.0238) R2dC : 0.478 R2C : 0.47
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.139 (0.0209) R2dN8 : 0.0596 R2N8 : 0.0511
σ : 0.187
deviance : 16
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_____
C
peak time of C : 1.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.62 0.16 10.7 -0.159 0.149 0.432 0.129 -0.423 0.151 2.46 27.77 89 -- --
11.93 0.161 10.7 -0.152 0.135 0.43 -0.203 -- 0.152 2.58 26.33 82 -- --
11.6 0.159 10.7 -0.156 0.143 0.439 -- -0.337 0.15 2.87 26.3 80 -- --
12.08 0.162 10.7 -0.154 0.145 0.429 -- -- 0.149 2.82 26.74 79 -- --
11.97 0.161 10.7 -0.154 -- 0.51 -- -0.286 0.165 -- 21.85 120 -- --
15.06 0.182 10.8 -0.181 0.515 -- -0.18 -- 0.119 1.21 -- -- -- --
15.19 0.183 10.8 -0.175 0.515 -- -- -- 0.12 1.21 -- -- -- --
12.37 0.164 10.7 -0.145 -- 0.502 -- -- 0.15 -- 20 134 -- --
12.69 0.166 10.7 -- 0.131 0.442 -- -- 0.166 3.02 26.29 79 -- --
31.6 0.263 10.8 -0.155 -- -- -- -- 0.131 -- -- -- -- --
16 0.187 10.8 -- 0.512 -- -- -- 0.139 1.2 -- -- -- --
12.92 0.167 10.7 -- -- 0.512 -- -- 0.166 -- 21.52 135 -- --
32.23 0.265 10.7 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.37 radiation 20 90 < th dose dependent sin 0 NA
3 11.47 radiation 30 90 < th dose dependent rect. 11 23
4 11.52 radiation 10 90 > th dose independent rect. 9 23
6 11.56 radiation 20 90 < th dose dependent rect. 5 12
8 11.63 radiation 10 90 > th dose independent sin 0 NA
14 11.67 radiation 30 90 < th dose dependent no NA NA
17 11.74 radiation 20 90 < th dose dependent rect. 19 23
24 11.81 radiation 30 90 < th dose dependent rect. 15 23
31 11.87 radiation 10 90 > th dose independent rect. 7 11
48 11.90 radiation 10 90 > th dose independent no NA NA
49 11.90 radiation 10 90 > th dose independent rect. 9 9
164 11.98 radiation 20 90 < th dose independent rect. 11 23
181 11.99 radiation 20 90 < th dose dependent rect. 9 23
195 12.03 radiation 30 90 < th dose dependent rect. 1 23
197 12.05 radiation 10 90 > th dose independent rect. 16 23
208 12.10 radiation 20 270 < th dose independent rect. 10 21
217 12.13 radiation 1 90 > th dose dependent rect. 7 12
241 12.17 humidity 80 10 > th dose independent sin 23 NA
262 12.19 radiation 1 90 > th dose dependent no NA NA
331 12.20 radiation 20 90 < th dose independent no NA NA
344 12.23 radiation 30 270 < th dose dependent rect. 2 15
345 12.23 radiation 20 90 < th dose dependent rect. 5 18
347 12.24 radiation 20 90 < th dose independent sin 0 NA
350 12.24 radiation 1 90 > th dose dependent rect. 9 23
352 12.25 radiation 20 90 < th dose independent rect. 15 23
353 12.25 radiation 20 30 < th dose independent rect. 17 23
360 12.26 radiation 20 90 < th dose dependent rect. 5 23
366 12.27 radiation 20 90 < th dose dependent rect. 5 15
394 12.29 radiation 20 90 < th dose independent rect. 1 23
395 12.29 humidity 60 10 > th dose dependent sin 23 NA
423 12.31 radiation 30 90 < th dose dependent rect. 3 23
424 12.32 radiation 1 90 > th dose dependent sin 23 NA
432 12.33 radiation 30 90 < th dose dependent rect. 21 23
450 12.36 humidity 80 10 < th dose independent sin 23 NA
461 12.36 radiation 1 90 > th dose dependent rect. 15 23
465 12.37 humidity 80 10 < th dose independent rect. 9 10
484 12.38 humidity 80 10 > th dose independent rect. 6 12
485 12.38 humidity 80 10 > th dose independent rect. 6 14
493 12.39 radiation 20 270 < th dose independent rect. 2 15
503 12.40 radiation 20 90 < th dose independent rect. 5 18
512 12.41 radiation 10 90 < th dose independent rect. 5 12
515 12.41 radiation 20 90 < th dose independent rect. 19 23
565 12.45 humidity 90 30 < th dose dependent rect. 7 12
569 12.46 humidity 80 10 < th dose independent rect. 9 8
571 12.46 radiation 10 10 > th dose independent rect. 9 23
576 12.46 humidity 90 30 < th dose dependent rect. 9 10
595 12.48 radiation 20 90 < th dose independent rect. 5 15
598 12.48 humidity 90 10 < th dose dependent sin 23 NA
615 12.49 radiation 10 90 < th dose dependent rect. 9 8
617 12.49 humidity 60 10 > th dose dependent rect. 6 14
619 12.49 humidity 90 10 < th dose dependent rect. 9 19
691 12.52 humidity 90 10 < th dose dependent rect. 7 21
694 12.52 humidity 90 30 < th dose dependent rect. 20 23
705 12.53 humidity 70 10 > th dose dependent rect. 6 12
709 12.53 humidity 90 30 < th dose dependent rect. 23 20
815 12.57 humidity 50 10 > th dose dependent rect. 13 23
943 12.59 humidity 80 10 > th dose independent rect. 6 10
964 12.60 radiation 20 10 < th dose independent rect. 6 17
968 12.60 radiation 20 10 < th dose dependent rect. 6 10
996 12.61 radiation 20 90 < th dose independent rect. 21 23