BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0558800 Os05g0558800|AK073985
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0558800 Protein of unknown function DUF1675 family pro... 853 0.0
>Os05g0558800 Protein of unknown function DUF1675 family protein
Length = 451
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/451 (94%), Positives = 424/451 (94%)
Query: 1 MDDENXXXXXXXXXXXXXXXXXKARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTN 60
MDDEN KARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTN
Sbjct: 1 MDDENGLELSLGLSLGGTSGKSKARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTN 60
Query: 61 AENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQKPVSSKRKLLSEEISFQKKP 120
AENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQKPVSSKRKLLSEEISFQKKP
Sbjct: 61 AENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQKPVSSKRKLLSEEISFQKKP 120
Query: 121 NTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKG 180
NTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKG
Sbjct: 121 NTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKG 180
Query: 181 SVVNRGSDRKRSSDDAAVGFQGKRQPXXXXXXXXXXKLPQGNPLSLQASNVVAVPYQVPS 240
SVVNRGSDRKRSSDDAAVGFQGKRQP KLPQGNPLSLQASNVVAVPYQVPS
Sbjct: 181 SVVNRGSDRKRSSDDAAVGFQGKRQPSFSGSESSSGKLPQGNPLSLQASNVVAVPYQVPS 240
Query: 241 QVSAPPSITNASNFTPVCTVQLRPPTNNGLAVTMGSTSQVAFGYPAVQLPTLETSSSWAF 300
QVSAPPSITNASNFTPVCTVQLRPPTNNGLAVTMGSTSQVAFGYPAVQLPTLETSSSWAF
Sbjct: 241 QVSAPPSITNASNFTPVCTVQLRPPTNNGLAVTMGSTSQVAFGYPAVQLPTLETSSSWAF 300
Query: 301 GAPPQAMSSFTAKDKVERAGISQADDGKKTQEAGASSSALVEDDKKSDRALPLMGSAIRP 360
GAPPQAMSSFTAKDKVERAGISQADDGKKTQEAGASSSALVEDDKKSDRALPLMGSAIRP
Sbjct: 301 GAPPQAMSSFTAKDKVERAGISQADDGKKTQEAGASSSALVEDDKKSDRALPLMGSAIRP 360
Query: 361 GIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEF 420
GIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEF
Sbjct: 361 GIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEF 420
Query: 421 MRHASADAPGQENSATLPAFPVGNQAASAQN 451
MRHASADAPGQENSATLPAFPVGNQAASAQN
Sbjct: 421 MRHASADAPGQENSATLPAFPVGNQAASAQN 451
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.306 0.123 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,544,022
Number of extensions: 752007
Number of successful extensions: 1721
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 158 (65.5 bits)