BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0558800 Os05g0558800|AK073985
(451 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28910.2 | chr4:14264330-14265680 REVERSE LENGTH=426 160 1e-39
AT3G29575.1 | chr3:11382416-11383657 REVERSE LENGTH=232 71 1e-12
AT1G13740.1 | chr1:4713969-4715158 FORWARD LENGTH=349 69 4e-12
AT3G07250.1 | chr3:2300579-2308305 REVERSE LENGTH=1295 69 7e-12
AT1G69260.1 | chr1:26039314-26040570 FORWARD LENGTH=346 62 7e-10
AT3G02140.1 | chr3:385478-386437 REVERSE LENGTH=320 61 1e-09
>AT4G28910.2 | chr4:14264330-14265680 REVERSE LENGTH=426
Length = 425
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 173/350 (49%), Gaps = 48/350 (13%)
Query: 100 QKPVSSKRKLLSEEISFQKKPNTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVA 159
+K +KRK ++ KK + D K + K + +S +TD+GST ENEDVA
Sbjct: 109 RKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKT----KASHVSTATDEGSTAENEDVA 164
Query: 160 ESEAEGSNSWLVAQREDSAKGSVVNRGSDRKRSSDDAAV--GFQGKRQPXXXXXXXXXXK 217
ESE G GS N + R D + G+R+
Sbjct: 165 ESEVGG--------------GSSSNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFT 210
Query: 218 LPQGN---PLSLQASNVV-AVPYQVPSQVSAPPSITNASNFTPVCTVQLRPPTNNGLAVT 273
+ + P ++ NVV ++PY +P++ S + T L+P N G
Sbjct: 211 MRNMSYTVPFTVHPQNVVTSMPYSLPTKESGQHA---------AATSLLQPNANAGNLPI 261
Query: 274 MGSTSQVAFGYPAVQLPTLETSSSWAFGAPPQAMSSFTAKDKVERAGISQADDGKK-TQE 332
M FGY VQLP L+ S A Q S F + V + +GK+ E
Sbjct: 262 M-------FGYSPVQLPMLDKDGSGGIVALSQ--SPFAGR--VPSNSATAKGEGKQPVAE 310
Query: 333 AGASSSAL---VEDDKKSDRALPLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTTGTGPNG 389
G+S A D+ + A SAI+PG+A +VKFGGSG+ P+LPWVSTTG+GP+G
Sbjct: 311 EGSSEDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSGPHG 370
Query: 390 RTISGVTYKFGRNEVKIVCACHGTHMTPEEFMRHASADAPGQENSATLPA 439
RTISGVTY++ N++KIVCACHG+HM+PEEF+RHAS + E+S + A
Sbjct: 371 RTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPESSMGMTA 420
>AT3G29575.1 | chr3:11382416-11383657 REVERSE LENGTH=232
Length = 231
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 376 DLPWVSTTGTGPNGRTISGVTYKFGR-NEVKIVCACHGTHMTPEEFMRHA 424
D+P+VSTTG GPNG+ I+G Y++ + EV+IVC CHG+ ++P EF++HA
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211
>AT1G13740.1 | chr1:4713969-4715158 FORWARD LENGTH=349
Length = 348
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 376 DLPWVSTTGTGPNGRTISGVTYKFGR-NEVKIVCACHGTHMTPEEFMRHA 424
D+P V T G GPNGR + G+ YK+G+ EV+I+C CHG+ +TP EF++H
Sbjct: 278 DMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHG 327
>AT3G07250.1 | chr3:2300579-2308305 REVERSE LENGTH=1295
Length = 1294
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 364 PNVKFGGSGS---YPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEF 420
P+ G+GS + +P V++TG GP G+T++G Y++ ++E+ I+C CHGT +P EF
Sbjct: 204 PHTNSNGNGSLLPFAQMPCVTSTGNGPEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEF 263
Query: 421 MRHASADAPGQENSATLPAFPVGNQAA 447
+ HA G S L VG++ A
Sbjct: 264 IVHAG----GTNVSHPLRHITVGDEFA 286
>AT1G69260.1 | chr1:26039314-26040570 FORWARD LENGTH=346
Length = 345
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 376 DLPWVSTTGTGPNGRTISGVTYKFGR-NEVKIVCACHGTHMTPEEFMRHA 424
++P V T G GPNG+ + G+ Y++G EV+I+C CHG ++P +F++HA
Sbjct: 273 EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHA 322
>AT3G02140.1 | chr3:385478-386437 REVERSE LENGTH=320
Length = 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 376 DLPWVSTTGTGPNGRTISGVTYKFGRN--EVKIVCACHGTHMTPEEFMRHA 424
D+P VST G +G+ + G Y +G N EVKIVC CHG+ ++P EF+RH
Sbjct: 240 DMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHG 290
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.306 0.123 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,989,364
Number of extensions: 441656
Number of successful extensions: 995
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 6
Length of query: 451
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,310,137
Effective search space: 2900237813
Effective search space used: 2900237813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 113 (48.1 bits)