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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0541100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0516) R2 : 0.412
β1 : -1.9 (0.225) R2dD : 0.154 R2D : -0.0763
β2 : 1.05 (0.122) R2dC : 0.0978 R2C : 0.0258
β3 : 1.52 (0.204) R2dE : 0.0823 R2E : 0.0877
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.59 (0.787) R2dD*E : 0.147 R2D*E : -0.129
γ1 : -1.04 (0.115) R2dN8 : 0.179 R2N8 : 0.0961
σ : 0.902
deviance : 375.09
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_____
C
peak time of C : 8.4
E
wheather : temperature
threshold : 30.11
memory length : 37
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.39 0.907 6.13 -1.83 1.05 1.52 -0.949 6.41 -1.04 8.37 30.4 40 -- --
423.08 0.958 6 -0.708 1.04 2.03 -1.91 -- -0.755 9.05 59.53 21 -- --
375.09 0.902 6.13 -1.9 1.05 1.52 -- 6.59 -1.04 8.4 30.11 37 -- --
431.05 0.967 6 -0.797 1.04 1.58 -- -- -0.773 8.18 31.93 52 -- --
433.6 0.97 6.17 -1.91 -- 1.59 -- 7.05 -1.05 -- 31.3 80 -- --
461.12 1.01 6.06 -1.16 1.23 -- -0.249 -- -1.04 6.69 -- -- -- --
461.21 1.01 6.07 -1.17 1.23 -- -- -- -1.04 6.58 -- -- -- --
467.89 1.01 6.02 -0.683 -- 2.19 -- -- -0.713 -- 44.46 373 -- --
446.48 0.984 5.97 -- 1.03 1.93 -- -- -0.657 8.58 32.07 63 -- --
539.86 1.09 6.09 -1.14 -- -- -- -- -1.02 -- -- -- -- --
497.25 1.04 6.04 -- 1.21 -- -- -- -0.911 6.64 -- -- -- --
479.33 1.02 6 -- -- 2.42 -- -- -0.61 -- 38.36 374 -- --
574.12 1.12 6.06 -- -- -- -- -- -0.89 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.28 temperature 30 90 < th dose dependent rect. 23 23
2 368.32 temperature 15 90 > th dose dependent rect. 7 22
3 368.59 temperature 25 10 > th dose independent rect. 8 12
5 369.44 temperature 30 10 < th dose dependent rect. 1 23
9 370.27 temperature 10 30 > th dose dependent rect. 23 23
29 372.33 temperature 30 30 < th dose dependent rect. 3 23
30 372.33 temperature 30 30 < th dose dependent rect. 19 23
31 372.37 temperature 25 10 > th dose independent sin 20 NA
32 372.39 temperature 30 30 < th dose dependent rect. 17 23
33 372.49 temperature 10 10 > th dose dependent rect. 7 23
35 372.64 temperature 30 30 < th dose dependent rect. 11 23
36 372.67 temperature 30 30 < th dose dependent no NA NA
37 372.67 temperature 30 30 < th dose dependent rect. 15 23
41 372.84 temperature 30 30 < th dose dependent rect. 9 23
43 372.96 temperature 30 30 < th dose dependent rect. 13 23
76 374.63 temperature 30 30 < th dose dependent rect. 5 23
78 374.70 temperature 30 30 < th dose dependent rect. 21 23
84 375.37 temperature 20 30 > th dose dependent rect. 13 23
99 375.92 temperature 20 30 > th dose dependent rect. 23 21
117 376.54 temperature 20 10 > th dose dependent rect. 8 12
118 376.57 temperature 20 10 > th dose dependent rect. 8 14
121 376.69 temperature 30 30 < th dose dependent rect. 7 23
124 376.76 temperature 20 30 > th dose dependent rect. 21 23
160 377.45 temperature 20 30 > th dose dependent no NA NA
176 377.91 temperature 20 10 > th dose dependent rect. 15 23
196 378.19 temperature 20 30 > th dose dependent rect. 11 23
214 378.58 temperature 20 30 > th dose dependent rect. 3 23
289 380.53 temperature 25 10 > th dose independent rect. 8 21
313 380.90 temperature 25 30 > th dose independent rect. 24 20
406 382.40 temperature 25 10 > th dose independent rect. 8 18
455 383.39 temperature 25 90 > th dose independent rect. 8 21
524 384.17 temperature 20 10 > th dose dependent sin 21 NA
559 384.69 temperature 20 30 > th dose dependent rect. 17 23
948 390.30 temperature 30 10 < th dose dependent sin 18 NA