Os05g0507300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calreticulin 3 (Fragment).
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Os05g0507300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calreticulin 3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.08 | 0.488 | 13.8 | -0.616 | 0.756 | 1.6 | 0.0223 | -1.36 | 0.272 | 22.9 | 4.621 | 11226 | -- | -- |
| 108.96 | 0.486 | 13.7 | -0.833 | 0.775 | 1.88 | 0.00951 | -- | 0.203 | 22.9 | 0.346 | 23113 | -- | -- |
| 108.08 | 0.484 | 13.8 | -0.617 | 0.756 | 1.6 | -- | -1.36 | 0.271 | 22.9 | 4.662 | 11237 | -- | -- |
| 108.74 | 0.486 | 13.7 | -0.871 | 0.747 | 1.82 | -- | -- | 0.23 | 22.9 | 9.586 | 24501 | -- | -- |
| 140.01 | 0.551 | 13.8 | -1.19 | -- | 1.77 | -- | -1.34 | 0.121 | -- | -5.742 | 23935 | -- | -- |
| 160.06 | 0.593 | 13.6 | 0.763 | 0.8 | -- | 0.122 | -- | 0.92 | 23.1 | -- | -- | -- | -- |
| 160.12 | 0.593 | 13.6 | 0.759 | 0.8 | -- | -- | -- | 0.92 | 23.1 | -- | -- | -- | -- |
| 142.49 | 0.556 | 13.7 | -0.918 | -- | 1.92 | -- | -- | 0.205 | -- | 9.125 | 23951 | -- | -- |
| 111.56 | 0.492 | 13.7 | -- | 0.728 | 1.6 | -- | -- | 0.437 | 22.9 | 10.21 | 9584 | -- | -- |
| 200 | 0.661 | 13.6 | 0.777 | -- | -- | -- | -- | 0.926 | -- | -- | -- | -- | -- |
| 175.29 | 0.619 | 13.6 | -- | 0.807 | -- | -- | -- | 0.835 | 23.2 | -- | -- | -- | -- |
| 141.71 | 0.554 | 13.6 | -- | -- | 1.81 | -- | -- | 0.577 | -- | 8.896 | 3797 | -- | -- |
| 215.94 | 0.686 | 13.6 | -- | -- | -- | -- | -- | 0.84 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 99.39 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 6 | 100.16 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 10 | 100.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 18 | 100.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 28 | 100.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 30 | 100.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 36 | 100.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 50 | 100.90 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 61 | 101.21 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 66 | 101.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 93 | 101.28 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 95 | 101.28 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 103 | 101.29 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 122 | 101.34 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 209 | 101.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 258 | 101.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 259 | 101.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 261 | 101.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 348 | 102.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 373 | 102.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 434 | 103.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 446 | 103.36 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 447 | 103.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 449 | 103.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 461 | 103.47 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 462 | 103.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 489 | 103.67 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 491 | 103.68 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 542 | 103.74 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 557 | 103.77 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 610 | 103.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 627 | 104.07 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 636 | 104.11 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 650 | 104.21 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 652 | 104.23 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 657 | 104.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 668 | 104.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 671 | 104.28 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 735 | 104.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 742 | 104.40 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 752 | 104.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 770 | 104.44 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 778 | 104.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 779 | 104.47 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 819 | 104.57 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 828 | 104.58 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 864 | 104.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 896 | 104.73 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 902 | 104.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 926 | 104.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 935 | 104.79 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 940 | 104.81 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 942 | 104.81 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 983 | 104.90 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |